diff cellprofiler.xml @ 2:78a16d8c8d5e draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 1907942bef43b20edfdbd1d1b5eb1cac3602848b"
author bgruening
date Thu, 16 Apr 2020 05:40:08 -0400
parents ba4fd9fbf924
children a98608f3abc5
line wrap: on
line diff
--- a/cellprofiler.xml	Thu Apr 09 08:14:24 2020 -0400
+++ b/cellprofiler.xml	Thu Apr 16 05:40:08 2020 -0400
@@ -1,5 +1,5 @@
-<tool id="cp_cellprofiler" name="cellProfiler" version="@CP_VERSION@">
-    <description>runs a cellProfiler pipeline assembled by all the cellProfiler tools upstream in the workflow</description>
+<tool id="cp_cellprofiler" name="CellProfiler" version="@CP_VERSION@">
+    <description>run a CellProfiler pipeline</description>
     <macros>
         <import>macros.xml</import>
         <xml name="test_assert_content" token_n="291">
@@ -31,11 +31,11 @@
     <inputs>
         <param name="pipeline" type="data" format="txt" label="Pipeline file" help="A ready-to-run .cppipe file. It can be created with various CellProfiler modules." />
         <param name="input_images" type="data" multiple="true" format="@FORMATS@" label="Images" />
-        <param name="detailed_output" type="boolean" label="Detailed logging file?" help="If set, a detailed cellprofiler log file will be generated." />
+        <param name="detailed_output" type="boolean" label="Detailed logging file?" help="If set, a detailed CellProfiler log file will be generated." />
     </inputs>
 
     <outputs>
-        <collection name="pipeline_output" type="list" label="Cellprofiler pipeline output files">
+        <collection name="pipeline_output" type="list" label="CellProfiler pipeline output files">
             <discover_datasets pattern="__designation_and_ext__" visible="false" directory="output"/>
         </collection>
         <data format="txt" name="logs" from_work_dir="cp.log" label="CellProfiler log">
@@ -112,13 +112,13 @@
     </tests>
     
     <help>
-    This tool runs a cellProfiler @CP_VERSION@ pipeline file. 
+    This tool runs a CellProfiler @CP_VERSION@ pipeline file. 
 
     *** Parameters ***
 
     images: multi-select image files
     
-    pipeline: cellProfiler pipeline file(.cppipe) file.
+    pipeline: CellProfiler pipeline file(.cppipe) file.
 
     *** Note ***