Mercurial > repos > bgruening > cp_cellprofiler

changeset 1:0b8f8406ee16 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 6a3036d24b5ec074936f8f8283b7e176f6f1ce70"
author bgruening
date Thu, 09 Apr 2020 08:14:24 -0400
parents ba4fd9fbf924
children 78a16d8c8d5e
files test-data/common.txt test-data/convert_objects_to_image.txt test-data/display_data_on_image.txt test-data/enhance_or_suppress_features.txt test-data/export_to_spreadsheet.txt test-data/gray_to_color.txt test-data/identify_primary_objects.txt test-data/mask_image.txt test-data/measure_granularity.txt test-data/measure_image_area_occupied.txt test-data/measure_image_intensity.txt test-data/measure_image_quality.txt test-data/measure_object_intensity.txt test-data/measure_object_size_shape.txt test-data/measure_texture.txt test-data/relate_objects.txt test-data/save_images.txt
diffstat 17 files changed, 17 insertions(+), 17 deletions(-) [+]
line wrap: on
line diff
--- a/test-data/common.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/common.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/convert_objects_to_image.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/convert_objects_to_image.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/display_data_on_image.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/display_data_on_image.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/enhance_or_suppress_features.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/enhance_or_suppress_features.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/export_to_spreadsheet.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/export_to_spreadsheet.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/gray_to_color.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/gray_to_color.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/identify_primary_objects.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/identify_primary_objects.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/mask_image.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/mask_image.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_granularity.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_granularity.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_image_area_occupied.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_image_area_occupied.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_image_intensity.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_image_intensity.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_image_quality.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_image_quality.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_object_intensity.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_object_intensity.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_object_size_shape.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_object_size_shape.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/measure_texture.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/measure_texture.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/relate_objects.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/relate_objects.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location:
--- a/test-data/save_images.txt	Thu Mar 26 17:14:42 2020 -0400
+++ b/test-data/save_images.txt	Thu Apr 09 08:14:24 2020 -0400
@@ -18,7 +18,7 @@
     Metadata extraction method:Extract from file/folder names
     Metadata source:File name
     Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+)
-    Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$
+    Regular expression to extract from folder name:(?P<field1>.*)
     Extract metadata from:All images
     Select the filtering criteria:and (file does contain "")
     Metadata file location: