Mercurial > repos > bgruening > cp_cellprofiler4

comparison macros.xml @ 0:b333df978624 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 4cb71c4badd30480d67860ff614410f37f2cc8d0"
author bgruening
date Mon, 25 Apr 2022 18:30:59 +0000
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children f0656d0f2a4d
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-1:000000000000 0:b333df978624
1 <macros>
2 <token name="@TOOL_VERSION@">4.2.1</token>
3 <token name="@PY_VERSION@">3.8</token>
4 <token name="@FORMATS@">jpg,png,tiff,bmp,gif,pcx,ppm,psd,pbm,pgm,eps</token>
5 <token name="@SPACES@">" "</token>
6 <!-- four spaces needed for CP pipeline file -->
7 <token name="@COMMON_HELP@">
8 .. class:: infomark
9
10 **Input**
11
12 Existing CellProfiler pipeline file *(.cppipe)* or generated by linking CellProfiler tools.
13
14 .. class:: infomark
15
16 **Output**
17
18 The input CellProfiler pipeline file *(.cppipe)* in addition to the settings of this module.
19
20 .. class:: warningmark
21
22 **IMPORTANT**
23
24 The first tool in a CellProfiler workflow has to be **Starting modules** and the last one **CellProfiler**. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.
25 </token>
26
27 <xml name="cp_requirements">
28 <requirements>
29 <requirement type="package" version="@TOOL_VERSION@">cellprofiler</requirement>
30 </requirements>
31 </xml>
32
33
34 <xml name="py_requirements">
35 <requirements>
36 <requirement type="package" version="@PY_VERSION@">python</requirement>
37 </requirements>
38 </xml>
39
40
41 <xml name="citations">
42 <citations>
43 <citation type="bibtex">
44 @article{McQuin_2018,
45 title = {CellProfiler 3.0: Next-generation image processing for biology},
46 author = {McQuin C, Goodman A, Chernyshev V, Kamentsky L, Cimini BA, Karhohs KW, Doan M, Ding L, Rafelski SM, Thirstrup D, Wiegraebe W, Singh S, Becker T, Caicedo JC, Carpenter AE},
47 year = {2018},
48 volume = {16(7):e2005970},
49 DOI = {10.1371/journal.pbio.2005970},
50 journal = {PLoS Biol.},
51 url = {https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2005970},
52 }
53 </citation>
54 </citations>
55 </xml>
56
57 </macros>
58