Mercurial > repos > bgruening > cp_color_to_gray
annotate color_to_gray.xml @ 2:bad171ed1e96 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | bgruening |
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date | Sun, 05 Nov 2023 09:33:04 +0000 |
parents | e8f822eeb9fd |
children |
rev | line source |
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1
e8f822eeb9fd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
bgruening
parents:
0
diff
changeset
|
1 <tool id="cp_color_to_gray" name="ColorToGray" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5"> |
2
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
2 <description>with CellProfiler</description> |
0
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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3 <macros> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
4 <import>macros.xml</import> |
2
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
5 <token name="@VERSION_SUFFIX@">1</token> |
0
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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6 <xml name="combine_weight"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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7 <param name="weight_red_channel" value="1.0" min = "0.0" max = "1.0" type="float" label="Relative weight of the red channel" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
8 <param name="weight_green_channel" value="1.0" min = "0.0" max = "1.0" type="float" label="Relative weight of the green channel" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
9 <param name="weight_blue_channel" value="1.0" min = "0.0" max = "1.0" type="float" label="Relative weight of the blue channel" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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10 </xml> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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11 <xml name="image_type_param"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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12 <param name="image_type" label="Image type" type="select"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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13 <option value="RGB">RGB</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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14 <option value="HSV">HSV</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
15 <option value="Channels">Channels</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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16 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
17 </xml> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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18 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
19 <xml name="split_rgb"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
20 <conditional name="con_convert_red"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
21 <param name="yes_no" type="select" label="Convert red to gray"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
22 <option value="Yes">Yes</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
23 <option value="No">No</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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24 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
25 <when value="Yes"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
26 <param name="name_output_image" value="OrigRed" type="text" label="Name the output image" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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27 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
28 <when value="No"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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29 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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30 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
31 <conditional name="con_convert_green"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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32 <param name="yes_no" type="select" label="Convert green to gray"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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33 <option value="Yes">Yes</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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34 <option value="No">No</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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35 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
36 <when value="Yes"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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37 <param name="name_output_image" value="OrigGreen" type="text" label="Name the output image" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
38 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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39 <when value="No"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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40 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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41 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
42 <conditional name="con_convert_blue"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
43 <param name="yes_no" type="select" label="Convert blue to gray"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
44 <option value="Yes">Yes</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
45 <option value="No">No</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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46 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
47 <when value="Yes"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
48 <param name="name_output_image" value="OrigBlue" type="text" label="Name the output image" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
49 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
50 <when value="No"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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51 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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52 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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53 </xml> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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54 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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55 <xml name="split_hsv"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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56 <conditional name="con_convert_hue"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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57 <param name="yes_no" type="select" label="Convert hue to gray"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
58 <option value="Yes">Yes</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
59 <option value="No">No</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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60 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
61 <when value="Yes"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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62 <param name="name_output_image" value="OrigHue" type="text" label="Name the output image" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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63 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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64 <when value="No"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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65 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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66 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
67 <conditional name="con_convert_saturation"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
68 <param name="yes_no" type="select" label="Convert saturation to gray"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
69 <option value="Yes">Yes</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
70 <option value="No">No</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
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71 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
72 <when value="Yes"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
73 <param name="name_output_image" value="OrigSaturation" type="text" label="Name the output image" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
74 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
75 <when value="No"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
76 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
77 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
78 <conditional name="con_convert_value"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
79 <param name="yes_no" type="select" label="Convert value to gray"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
80 <option value="Yes">Yes</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
81 <option value="No">No</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
82 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
83 <when value="Yes"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
84 <param name="name_output_image" value="OrigValue" type="text" label="Name the output image" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
85 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
86 <when value="No"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
87 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
88 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
89 </xml> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
90 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
91 <xml name="combine"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
92 <param name="name_output_image" label="Name the output image" value="OrigGray" type="text"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
93 <expand macro="text_validator" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
94 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
95 <conditional name="con_image_type"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
96 <expand macro="image_type_param" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
97 <when value="RGB"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
98 <expand macro="combine_weight"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
99 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
100 <when value="HSV"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
101 <expand macro="combine_weight"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
102 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
103 <when value="Channels"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
104 <repeat name="rpt_channel" title="another channel" min="1"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
105 <param name="channel_no" value="1" type="integer" label="Channel number" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
106 <param name="weight_of_channel" value="1.0" type="float" min = "0.0" max = "1.0" label="Relative weight of the channel" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
107 </repeat> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
108 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
109 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
110 </xml> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
111 <xml name="split"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
112 <conditional name="con_image_type"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
113 <expand macro="image_type_param" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
114 <when value="RGB"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
115 <expand macro="split_rgb"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
116 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
117 <when value="HSV"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
118 <expand macro="split_hsv"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
119 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
120 <when value="Channels"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
121 <repeat name="rpt_channel" title="another channel" min="1"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
122 <param name="channel_no" value="1" type="integer" label="Channel number" help="This setting chooses a channel to be processed. The channel number should be within the range of channels in the image."/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
123 <param name="image_name" type="text" label="Image name" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
124 </repeat> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
125 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
126 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
127 </xml> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
128 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
129 </macros> |
2
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
130 <edam_operations> |
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
131 <edam_operation>operation_3443</edam_operation> |
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
132 </edam_operations> |
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
133 <xrefs> |
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
134 <xref type="bio.tools">CellProfiler</xref> |
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
135 <xref type="biii">cellprofiler</xref> |
bad171ed1e96
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
bgruening
parents:
1
diff
changeset
|
136 </xrefs> |
0
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
137 <expand macro="py_requirements"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
138 <command detect_errors="exit_code"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
139 <![CDATA[ |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
140 python '$__tool_directory__/color_to_gray.py' -p '$input_pipeline' -i '$input_json' |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
141 ]]> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
142 </command> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
143 <configfiles> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
144 <inputs name="input_json"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
145 </configfiles> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
146 <inputs> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
147 <expand macro="input_pipeline_param"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
148 <param name="name_input_image" label="Enter the name of the input image" value="DNA" type="text"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
149 <expand macro="text_validator" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
150 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
151 <conditional name="con_conversion_method"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
152 <param name="conversion_method" type="select" label="Conversion method" > |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
153 <help> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
154 <![CDATA[ |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
155 How do you want to convert the color image? |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
156 <i>Split:</i> Splits the channels of a color image (e.g., red, green, blue) into separate grayscale images. |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
157 <i>Combine:</i> Converts a color image to a grayscale image by combining channels together (e.g., red, green, blue). |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
158 ]]> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
159 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
160 </help> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
161 <option value="Combine">Combine</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
162 <option value="Split">Split</option> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
163 </param> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
164 <when value="Combine"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
165 <expand macro="combine"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
166 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
167 <when value="Split"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
168 <expand macro="split"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
169 </when> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
170 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
171 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
172 </inputs> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
173 <outputs> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
174 <expand macro="output_pipeline_param" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
175 </outputs> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
176 <tests> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
177 <test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
178 <param name="input_pipeline" value="common.cppipe"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
179 <param name="name_input_image" value="OrigColor" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
180 <conditional name="con_conversion_method"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
181 <param name="conversion_method" value="Combine"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
182 <param name="name_output_image" value="OrigGray" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
183 <conditional name="con_image_type"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
184 <param name = "image_type" value="RGB"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
185 <param name ="weight_red_channel" value = "1.0" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
186 <param name ="weight_green_channel" value = "1.0" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
187 <param name ="weight_blue_channel" value = "1.0" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
188 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
189 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
190 <expand macro="test_out_file" file="color_to_gray.cppipe" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
191 </test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
192 <test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
193 <param name="input_pipeline" value="common.cppipe"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
194 <param name="name_input_image" value="DNA" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
195 <conditional name="con_conversion_method"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
196 <param name="conversion_method" value="Combine"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
197 <param name="name_output_image" value="OrigGray" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
198 <conditional name="con_image_type"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
199 <param name = "image_type" value="Channels"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
200 <repeat name="rpt_channel"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
201 <param name="channel_no" value="2" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
202 <param name="weight_of_channel" value="0.2" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
203 </repeat> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
204 <repeat name="rpt_channel"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
205 <param name="channel_no" value="3" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
206 <param name="weight_of_channel" value="0.5" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
207 </repeat> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
208 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
209 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
210 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
211 <expand macro="test_out_file" file="color_to_gray_combine_channels.cppipe" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
212 </test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
213 <test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
214 <param name="input_pipeline" value="common.cppipe"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
215 <param name="name_input_image" value="DNA" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
216 <conditional name="con_conversion_method"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
217 <param name="conversion_method" value="Split"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
218 <param name="name_output_image" value="OrigGray" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
219 <conditional name="con_image_type"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
220 <param name = "image_type" value="HSV"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
221 <conditional name="con_convert_hue"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
222 <param name="yes_no" value="Yes" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
223 <param name="name_output_image" value="OutputHue" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
224 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
225 <conditional name="con_convert_saturation"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
226 <param name="yes_no" value="No" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
227 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
228 <conditional name="con_convert_value"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
229 <param name="yes_no" value="Yes" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
230 <param name="name_output_image" value="OutputValue" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
231 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
232 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
233 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
234 |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
235 <expand macro="test_out_file" file="color_to_gray_split_hsv.cppipe" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
236 </test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
237 <test> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
238 <param name="input_pipeline" value="common.cppipe"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
239 <param name="name_input_image" value="DNA" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
240 <conditional name="con_conversion_method"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
241 <param name="conversion_method" value="Split"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
242 <param name="name_output_image" value="DNA" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
243 <conditional name="con_image_type"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
244 <param name = "image_type" value="RGB"/> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
245 <conditional name="con_convert_red"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
246 <param name="yes_no" value="Yes" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
247 <param name="name_output_image" value="OutputRed" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
248 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
249 <conditional name="con_convert_green"> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
250 <param name="yes_no" value="Yes" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
251 <param name="name_output_image" value="OutputGreen" /> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
252 </conditional> |
4395ea2a01f4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff
changeset
|
253 <conditional name="con_convert_blue"> |
4395ea2a01f4
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254 <param name="yes_no" value="No" /> |
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255 |
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256 </conditional> |
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257 </conditional> |
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258 </conditional> |
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259 |
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260 <expand macro="test_out_file" file="color_to_gray_split_rgb.cppipe" /> |
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261 </test> |
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262 <test> |
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263 <param name="input_pipeline" value="common.cppipe"/> |
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264 <param name="name_input_image" value="DNA" /> |
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265 <conditional name="con_conversion_method"> |
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266 <param name="conversion_method" value="Split"/> |
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267 <param name="name_output_image" value="DNA" /> |
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268 <conditional name="con_image_type"> |
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269 <param name = "image_type" value="Channels"/> |
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270 <repeat name="rpt_channel"> |
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271 <param name="channel_no" value="2" /> |
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272 <param name="image_name" value="Image2" /> |
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273 </repeat> |
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274 <repeat name="rpt_channel"> |
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275 <param name="channel_no" value="3" /> |
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276 <param name="image_name" value="Image3" /> |
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277 </repeat> |
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278 </conditional> |
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279 </conditional> |
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280 |
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281 <expand macro="test_out_file" file="color_to_gray_split_channels.cppipe" /> |
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282 </test> |
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283 </tests> |
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284 <help> |
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285 <![CDATA[ |
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286 |
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287 .. class:: infomark |
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288 |
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289 **What it does** |
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290 |
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291 This module converts color and channel-stacked images to grayscale. All channels can be merged into one grayscale image (Combine), or each channel can be extracted into a separate grayscale image (Split). If you use Combine, the relative weights you provide allow adjusting the contribution of the colors relative to each other. Note that all Identify modules require grayscale images. |
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292 |
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293 @COMMON_HELP@ |
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294 ]]> |
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295 </help> |
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296 <expand macro="citations"/> |
2
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297 </tool> |