Mercurial > repos > bgruening > cp_image_math

comparison test-data/export_to_spreadsheet_multi.cppipe @ 3:6100a22bf4f2 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
author bgruening
date Fri, 26 Feb 2021 14:06:51 +0000
parents 6d3851ac885f
children
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2:c09dcda1143f 3:6100a22bf4f2
3 DateRevision:319 3 DateRevision:319
4 GitHash: 4 GitHash:
5 ModuleCount:5 5 ModuleCount:5
6 HasImagePlaneDetails:False 6 HasImagePlaneDetails:False
7 7
8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] 8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
9 : 9 :
10 Filter images?:Images only 10 Filter images?:Images only
11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".") 11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
12 12
13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] 13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
14 Extract metadata?:Yes 14 Extract metadata?:Yes
15 Metadata data type:Text 15 Metadata data type:Text
16 Metadata types:{} 16 Metadata types:{}
17 Extraction method count:1 17 Extraction method count:1
18 Metadata extraction method:Extract from file/folder names 18 Metadata extraction method:Extract from file/folder names
62 Output file location:Default Output Folder\x7C 62 Output file location:Default Output Folder\x7C
63 Create a GenePattern GCT file?:Yes 63 Create a GenePattern GCT file?:Yes
64 Select source of sample row name:Image filename 64 Select source of sample row name:Image filename
65 Select the image to use as the identifier:DNA 65 Select the image to use as the identifier:DNA
66 Select the metadata to use as the identifier:None 66 Select the metadata to use as the identifier:None
67 Export all measurement types?:No 67 Export all measurement types?:Yes
68 Press button to select measurements: 68 Press button to select measurements:
69 Representation of Nan/Inf:NaN 69 Representation of Nan/Inf:NaN
70 Add a prefix to file names?:Yes 70 Add a prefix to file names?:Yes
71 Filename prefix:MyExpt_ 71 Filename prefix:MyExpt_
72 Overwrite existing files without warning?:Yes 72 Overwrite existing files without warning?:Yes
73 Data to export:Image 73 Data to export:Do not use
74 Combine these object measurements with those of the previous object?:No
75 File name:data.csv
76 Use the object name for the file name?:No
77 Data to export:Experiment
78 Combine these object measurements with those of the previous object?:No 74 Combine these object measurements with those of the previous object?:No
79 File name:DATA.csv 75 File name:DATA.csv
80 Use the object name for the file name?:Yes 76 Use the object name for the file name?:Yes