Mercurial > repos > bgruening > cp_image_math

comparison test-data/identify_primary_objects.cppipe @ 3:6100a22bf4f2 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
author bgruening
date Fri, 26 Feb 2021 14:06:51 +0000
parents 6d3851ac885f
children
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2:c09dcda1143f 3:6100a22bf4f2
3 DateRevision:319 3 DateRevision:319
4 GitHash: 4 GitHash:
5 ModuleCount:5 5 ModuleCount:5
6 HasImagePlaneDetails:False 6 HasImagePlaneDetails:False
7 7
8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] 8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
9 : 9 :
10 Filter images?:Images only 10 Filter images?:Images only
11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".") 11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
12 12
13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] 13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
14 Extract metadata?:Yes 14 Extract metadata?:Yes
15 Metadata data type:Text 15 Metadata data type:Text
16 Metadata types:{} 16 Metadata types:{}
17 Extraction method count:1 17 Extraction method count:1
18 Metadata extraction method:Extract from file/folder names 18 Metadata extraction method:Extract from file/folder names
72 Threshold settings version:10 72 Threshold settings version:10
73 Threshold strategy:Global 73 Threshold strategy:Global
74 Thresholding method:Otsu 74 Thresholding method:Otsu
75 Threshold smoothing scale:1.3488 75 Threshold smoothing scale:1.3488
76 Threshold correction factor:0.9 76 Threshold correction factor:0.9
77 Lower and upper bounds on threshold:0.0,1.0 77 Lower and upper bounds on threshold:0.0000,1.0000
78 Manual threshold:0 78 Manual threshold:0
79 Select the measurement to threshold with:None 79 Select the measurement to threshold with:None
80 Two-class or three-class thresholding?:Two classes 80 Two-class or three-class thresholding?:Two classes
81 Assign pixels in the middle intensity class to the foreground or the background?:Foreground 81 Assign pixels in the middle intensity class to the foreground or the background?:Foreground
82 Size of adaptive window:500 82 Size of adaptive window:500