Mercurial > repos > bgruening > cp_measure_granularity

comparison test-data/track_object_measurement_intensity.cppipe @ 5:ac5bea85a391 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
author bgruening
date Fri, 26 Feb 2021 14:13:40 +0000
parents a1a961c46d4b
children
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4:a1a961c46d4b 5:ac5bea85a391
3 DateRevision:319 3 DateRevision:319
4 GitHash: 4 GitHash:
5 ModuleCount:5 5 ModuleCount:5
6 HasImagePlaneDetails:False 6 HasImagePlaneDetails:False
7 7
8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] 8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
9 : 9 :
10 Filter images?:Images only 10 Filter images?:Images only
11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".") 11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
12 12
13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] 13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
14 Extract metadata?:Yes 14 Extract metadata?:Yes
15 Metadata data type:Text 15 Metadata data type:Text
16 Metadata types:{} 16 Metadata types:{}
17 Extraction method count:1 17 Extraction method count:1
18 Metadata extraction method:Extract from file/folder names 18 Metadata extraction method:Extract from file/folder names
80 Maximum mitosis distance, in pixel units:40 80 Maximum mitosis distance, in pixel units:40
81 Average cell diameter in pixels:35.0 81 Average cell diameter in pixels:35.0
82 Use advanced configuration parameters:No 82 Use advanced configuration parameters:No
83 Cost of cell to empty matching:15.0 83 Cost of cell to empty matching:15.0
84 Weight of area difference in function matching cost:25.0 84 Weight of area difference in function matching cost:25.0
85