Mercurial > repos > bgruening > cp_overlay_outlines

comparison overlay_outlines.xml @ 2:b44b081bcf37 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author bgruening
date Sun, 05 Nov 2023 09:39:27 +0000
parents 91560258e972
children
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1:91560258e972 2:b44b081bcf37
1 <tool id="cp_overlay_outlines" name="OverlayOutlines" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5"> 1 <tool id="cp_overlay_outlines" name="OverlayOutlines" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
2 <description> places outlines of objects over a desired image. </description> 2 <description>with CellProfiler</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 <xml name="non_blank"> 6 <xml name="non_blank">
7 <param name="image_to_outline" type="text" label="Enter the name of image on which to display outlines" > 7 <param name="image_to_outline" type="text" label="Enter the name of image on which to display outlines" >
8 <help> 8 <help>
9 <![CDATA[ 9 <![CDATA[
10 Choose the image to serve as the background for the outlines. You can choose from images that were loaded or created by modules previous to this one. 10 Choose the image to serve as the background for the outlines. You can choose from images that were loaded or created by modules previous to this one.
58 <option value="Thick">Thick</option> 58 <option value="Thick">Thick</option>
59 </param> 59 </param>
60 </xml> 60 </xml>
61 61
62 </macros> 62 </macros>
63 <edam_operations>
64 <edam_operation>operation_3443</edam_operation>
65 </edam_operations>
66 <xrefs>
67 <xref type="bio.tools">CellProfiler</xref>
68 <xref type="biii">cellprofiler</xref>
69 </xrefs>
63 <expand macro="py_requirements"/> 70 <expand macro="py_requirements"/>
64 <command detect_errors="exit_code"> 71 <command detect_errors="exit_code">
65 <![CDATA[ 72 <![CDATA[
66 python '$__tool_directory__/overlay_outlines.py' -p '$input_pipeline' -i '$input_json' 73 python '$__tool_directory__/overlay_outlines.py' -p '$input_pipeline' -i '$input_json'
67 ]]> 74 ]]>