Mercurial > repos > bgruening > cp_relate_objects
diff macros.xml @ 0:3a2cfcd7c38a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 6d73056a625002d0275b5a9a90a9fae329ce47f1"
author | bgruening |
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date | Thu, 26 Mar 2020 17:44:27 -0400 |
parents | |
children | b6f13e783ac5 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Mar 26 17:44:27 2020 -0400 @@ -0,0 +1,73 @@ +<macros> + <token name="@CP_VERSION@">3.1.9</token> + <token name="@PY_VERSION@">2.7.16</token> + <token name="@FORMATS@">jpg,png,tiff,bmp,gif,pcx,ppm,psd,pbm,pgm,eps</token> + + <token name="@SPACES@">" "</token> <!-- four spaces needed for CP pipeline file --> + + <xml name="output_pipeline_macro"> + <data name="out_file" from_work_dir="output" format="txt" label="Output pipeline" /> + </xml> + + <xml name="input_pipeline_macro"> + <param name="input_pipeline" type="data" format="data" label="Pipeline to select"/> + </xml> + + <xml name="cp_requirements"> + <requirements> + <requirement type="package" version="@CP_VERSION@">cellprofiler</requirement> + </requirements> + </xml> + + <xml name="py_requirements"> + <requirements> + <requirement type="package" version="@PY_VERSION@">python</requirement> + </requirements> + </xml> + + <xml name="citations"> + <citations> + <citation type="bibtex"> + @misc{galaxytoolscellprofiler, + author = {Sun, Yi}, + year = {2020}, + title = {Cellprofiler Galaxy tools}, + publisher = {Github}, + journal = {Github repository}, + url = {https://github.com/bgruening/galaxytools/tools/cellrprofiler}, + } + </citation> + </citations> + </xml> + + <xml name="cmd_modules"> + <command detect_errors="aggressive"><![CDATA[ + python '$script_file' '$inputs' '$input_pipeline' + ]]></command> + </xml> + + <xml name="text_validator"> + <validator type="regex" message="Only numbers, letters, hyphen, underscore and spaces are allowed">^[A-Za-z0-9 _-]*$</validator> + </xml> + + <xml name="test_input_pipeline_param"> + <param name="input_pipeline" value="common.txt" /> + </xml> + + <xml name="test_out_file" token_file="common.txt"> + <output name="out_file" ftype="txt" file="@FILE@" lines_diff="0"/> + </xml> + + <xml name="help" token_module="common"> + <help> + This tool appends the inputs of the @MODULE@ module to an existing pipeline file (.cppipe) + + Input: existing pipeline file + + Output: new pipeline file + + Combine this tool with "Common" tool and "CellProfiler" tool together to run the current module alone. + </help> + </xml> +</macros> +