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comparison track_objects.xml @ 2:972d2c365739 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author bgruening
date Sun, 05 Nov 2023 09:31:44 +0000
parents 1fd453cd757b
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1:1fd453cd757b 2:972d2c365739
1 <tool id="cp_track_objects" name="TrackObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5"> 1 <tool id="cp_track_objects" name="TrackObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
2 <description> tracking objects throughout sequential frames of a series of images</description> 2 <description>with CellProfiler</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 <xml name="common"> 6 <xml name="common">
7 <conditional name="con_filter_by_lifetime"> 7 <conditional name="con_filter_by_lifetime">
8 <param name="filter_by_lifetime" type="select" label="Filter objects by lifetime?" help = "Select Yes if you want objects to be filtered by their lifetime, i.e., total duration in frames. This is useful for marking objects which transiently appear and disappear, such as the results of a mis-segmentation."> 8 <param name="filter_by_lifetime" type="select" label="Filter objects by lifetime?" help = "Select Yes if you want objects to be filtered by their lifetime, i.e., total duration in frames. This is useful for marking objects which transiently appear and disappear, such as the results of a mis-segmentation.">
9 <option value="Yes">Yes</option> 9 <option value="Yes">Yes</option>
10 <option value="No">No</option> 10 <option value="No">No</option>
210 </when> 210 </when>
211 </conditional> 211 </conditional>
212 212
213 </xml> 213 </xml>
214 </macros> 214 </macros>
215 <edam_operations>
216 <edam_operation>operation_3443</edam_operation>
217 </edam_operations>
218 <xrefs>
219 <xref type="bio.tools">CellProfiler</xref>
220 <xref type="biii">cellprofiler</xref>
221 </xrefs>
215 <expand macro="py_requirements"/> 222 <expand macro="py_requirements"/>
216 <command detect_errors="exit_code"> 223 <command detect_errors="exit_code">
217 <![CDATA[ 224 <![CDATA[
218 python '$__tool_directory__/track_objects.py' -p '$input_pipeline' -i '$input_json' 225 python '$__tool_directory__/track_objects.py' -p '$input_pipeline' -i '$input_json'
219 ]]> 226 ]]>