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planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164
author bgruening
date Sun, 16 Oct 2022 11:52:10 +0000
parents 4f7e6612906b
children
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e94dc7945639 planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164
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4 __DATA_FETCH__ | 2022-09-01 |32104.0
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5 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0 | 2022-09-01 |6885.0
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7 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 | 2022-09-01 |2661.0
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128 toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0 | 2022-09-01 |132.0
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129 toolshed.g2.bx.psu.edu/repos/iuc/obi_uniq/obi_uniq/1.2.13 | 2022-09-01 |129.0
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130 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.1.0.46-0 | 2022-09-01 |129.0
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139 toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy0 | 2022-09-01 |110.0
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140 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2 | 2022-09-01 |108.0
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144 toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0 | 2022-09-01 |104.0
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145 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1 | 2022-09-01 |104.0
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146 toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.5.1+galaxy0 | 2022-09-01 |103.0
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147 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/1.1.2+galaxy2 | 2022-09-01 |102.0
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153 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.2 | 2022-09-01 |95.0
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157 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.7.1+galaxy0 | 2022-09-01 |92.0
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158 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7 | 2022-09-01 |91.0
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162 toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.1 | 2022-09-01 |89.0
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170 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2 | 2022-09-01 |79.0
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190 toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_hmmsearch/0.1.0 | 2022-09-01 |68.0
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191 toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 | 2022-09-01 |67.0
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192 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.10.1+galaxy2 | 2022-09-01 |66.0
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193 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 | 2022-09-01 |66.0
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194 toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0+galaxy2 | 2022-09-01 |66.0
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195 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_inspect/scanpy_inspect/1.7.1+galaxy0 | 2022-09-01 |65.0
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197 toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0 | 2022-09-01 |63.0
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203 toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4+galaxy0 | 2022-09-01 |62.0
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205 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_mpileup/bcftools_mpileup/1.10+galaxy2 | 2022-09-01 |59.0
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207 toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.3 | 2022-09-01 |59.0
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209 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.1 | 2022-09-01 |59.0
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211 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/2.18.2.1 | 2022-09-01 |58.0
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212 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy1 | 2022-09-01 |57.0
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214 toolshed.g2.bx.psu.edu/repos/iuc/graphlan_annotate/graphlan_annotate/1.0.0.0 | 2022-09-01 |57.0
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215 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy0 | 2022-09-01 |57.0
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216 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0 | 2022-09-01 |56.0
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217 CONVERTER_interval_to_bed_0 | 2022-09-01 |56.0
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218 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 | 2022-09-01 |56.0
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219 toolshed.g2.bx.psu.edu/repos/iuc/pear/iuc_pear/0.9.6.2 | 2022-09-01 |56.0
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220 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1 | 2022-09-01 |55.0
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221 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/3.6+galaxy0 | 2022-09-01 |55.0
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224 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_tin/2.6.4.1 | 2022-09-01 |54.0
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228 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.6.0+galaxy0 | 2022-09-01 |53.0
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230 toolshed.g2.bx.psu.edu/repos/bgruening/tgsgapcloser/tgsgapcloser/1.0.3+galaxy0 | 2022-09-01 |52.0
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234 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/3.3.5+galaxy0 | 2022-09-01 |51.0
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236 toolshed.g2.bx.psu.edu/repos/iuc/fastqe/fastqe/0.2.6+galaxy2 | 2022-09-01 |51.0
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237 toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3.2+galaxy0 | 2022-09-01 |50.0
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239 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_GC/2.6.4 | 2022-09-01 |49.0
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240 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy1 | 2022-09-01 |49.0
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243 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/2.18.2.1 | 2022-09-01 |48.0
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244 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardInsertSize/1.56.0 | 2022-09-01 |48.0
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247 toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.39.5.1 | 2022-09-01 |47.0
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248 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2 | 2022-09-01 |47.0
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249 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 | 2022-09-01 |46.0
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251 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.3.2.0.0 | 2022-09-01 |46.0
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252 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.8.0+galaxy0 | 2022-09-01 |46.0
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253 toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.2.0 | 2022-09-01 |45.0
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254 toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6 | 2022-09-01 |45.0
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255 toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0 | 2022-09-01 |45.0
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256 comp1 | 2022-09-01 |44.0
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257 CONVERTER_interval_to_bedstrict_0 | 2022-09-01 |44.0
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259 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1 | 2022-09-01 |44.0
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260 toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.1.2+galaxy2 | 2022-09-01 |43.0
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261 toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/2.1.1 | 2022-09-01 |42.0
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262 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.6+galaxy0 | 2022-09-01 |42.0
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263 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.4 | 2022-09-01 |42.0
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264 toolshed.g2.bx.psu.edu/repos/rnateam/peakachu/peakachu/0.1.0.2 | 2022-09-01 |41.0
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267 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.5.2+galaxy0 | 2022-09-01 |40.0
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268 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.6.0+galaxy0 | 2022-09-01 |40.0
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269 toolshed.g2.bx.psu.edu/repos/iuc/bracken/est_abundance/2.7+galaxy1 | 2022-09-01 |40.0
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270 toolshed.g2.bx.psu.edu/repos/devteam/fastx_clipper/cshl_fastx_clipper/1.0.1 | 2022-09-01 |40.0
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271 toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.0 | 2022-09-01 |40.0
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272 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/0.0.3 | 2022-09-01 |40.0
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273 toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy0 | 2022-09-01 |40.0
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274 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.5.1.0.0 | 2022-09-01 |40.0
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275 toolshed.g2.bx.psu.edu/repos/iuc/ragtag/ragtag/2.1.0+galaxy0 | 2022-09-01 |40.0
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276 CONVERTER_uncompressed_to_gz | 2022-09-01 |40.0
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277 toolshed.g2.bx.psu.edu/repos/ethevenot/heatmap/Heatmap/2.2.2 | 2022-09-01 |40.0
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278 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_tagbed/2.30.0 | 2022-09-01 |39.0
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279 CONVERTER_bed_gff_or_vcf_to_bigwig_0 | 2022-09-01 |39.0
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280 toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1 | 2022-09-01 |39.0
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281 toolshed.g2.bx.psu.edu/repos/devteam/fastx_clipper/cshl_fastx_clipper/1.0.3+galaxy0 | 2022-09-01 |39.0
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282 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy9 | 2022-09-01 |39.0
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283 toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy1 | 2022-09-01 |38.0
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284 toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.3+galaxy0 | 2022-09-01 |38.0
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285 CONVERTER_bam_to_bigwig_0 | 2022-09-01 |37.0
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286 toolshed.g2.bx.psu.edu/repos/iuc/obi_clean/obi_clean/1.2.13 | 2022-09-01 |37.0
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287 toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.39.5.0 | 2022-09-01 |37.0
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288 toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10+galaxy1 | 2022-09-01 |37.0
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289 Convert characters1 | 2022-09-01 |37.0
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290 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 | 2022-09-01 |36.0
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291 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0 | 2022-09-01 |36.0
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292 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.3.1 | 2022-09-01 |36.0
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293 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft_add/7.505+galaxy0 | 2022-09-01 |36.0
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294 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.1 | 2022-09-01 |36.0
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296 toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/3.6+galaxy1 | 2022-09-01 |35.0
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297 toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.4+galaxy2 | 2022-09-01 |35.0
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298 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.15+galaxy0 | 2022-09-01 |35.0
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300 toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.5.1+galaxy0 | 2022-09-01 |35.0
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303 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/fastq_trimmer/1.1.5 | 2022-09-01 |34.0
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307 toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator/metagene_annotator/1.0.0 | 2022-09-01 |33.0
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308 toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.1+galaxy0 | 2022-09-01 |33.0
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311 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/3.6+galaxy0 | 2022-09-01 |32.0
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312 toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.2+galaxy0 | 2022-09-01 |32.0
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314 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0 | 2022-09-01 |32.0
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316 toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.39.5.0 | 2022-09-01 |31.0
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317 CONVERTER_interval_to_bgzip_0 | 2022-09-01 |31.0
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318 CONVERTER_interval_to_bed12_0 | 2022-09-01 |31.0
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319 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy1 | 2022-09-01 |31.0
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320 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1 | 2022-09-01 |31.0
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321 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_filter/3.4 | 2022-09-01 |30.0
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322 toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.26.0+galaxy0 | 2022-09-01 |30.0
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323 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.3.1+galaxy1 | 2022-09-01 |30.0
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324 toolshed.g2.bx.psu.edu/repos/bebatut/format_metaphlan2_output/format_metaphlan2_output/0.1.0 | 2022-09-01 |30.0
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325 ChangeCase | 2022-09-01 |30.0
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326 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0 | 2022-09-01 |30.0
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327 toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes/qiime_extract_barcodes/1.9.1.0 | 2022-09-01 |30.0
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328 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.4+galaxy0 | 2022-09-01 |29.0
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329 Show beginning1 | 2022-09-01 |29.0
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330 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.6+galaxy0 | 2022-09-01 |29.0
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331 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 | 2022-09-01 |28.0
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332 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/2.18.2.1 | 2022-09-01 |28.0
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333 toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy0 | 2022-09-01 |28.0
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334 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.5 | 2022-09-01 |28.0
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335 CONVERTER_bed_to_fli_0 | 2022-09-01 |28.0
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336 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.30.0+galaxy1 | 2022-09-01 |28.0
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337 toolshed.g2.bx.psu.edu/repos/ebi-gxa/anndata_ops/anndata_ops/1.6.0+galaxy1 | 2022-09-01 |28.0
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338 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.4+galaxy0 | 2022-09-01 |28.0
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339 toolshed.g2.bx.psu.edu/repos/iuc/links/links/2.0.1+galaxy+1 | 2022-09-01 |28.0
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340 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.6+galaxy0 | 2022-09-01 |28.0
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341 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/1.0.0 | 2022-09-01 |28.0
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342 toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_alignment_ends/bctools_extract_alignment_ends/0.2.2 | 2022-09-01 |28.0
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343 CONVERTER_interval_to_tabix_0 | 2022-09-01 |27.0
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344 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.2 | 2022-09-01 |27.0
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345 toolshed.g2.bx.psu.edu/repos/devteam/fastx_trimmer/cshl_fastx_trimmer/1.0.2+galaxy0 | 2022-09-01 |27.0
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346 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2 | 2022-09-01 |27.0
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347 toolshed.g2.bx.psu.edu/repos/iuc/vcf2maf/vcf2maf/1.6.21 | 2022-09-01 |27.0
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348 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy3 | 2022-09-01 |26.0
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349 toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2 | 2022-09-01 |26.0
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350 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 | 2022-09-01 |26.0
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351 toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 | 2022-09-01 |26.0
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352 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy1 | 2022-09-01 |26.0
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353 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_preprocess/monocle3_preprocess/0.1.4+galaxy0 | 2022-09-01 |26.0
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354 toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.39.5.0 | 2022-09-01 |26.0
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355 toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.15.1+galaxy0 | 2022-09-01 |25.0
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356 interactive_tool_rstudio | 2022-09-01 |25.0
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357 toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/0.2 | 2022-09-01 |25.0
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358 __TAG_FROM_FILE__ | 2022-09-01 |25.0
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359 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69 | 2022-09-01 |24.0
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360 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbmap/bbtools_bbmap/1.0.0+galaxy1.0.0 | 2022-09-01 |24.0
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361 toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.8.4 | 2022-09-01 |24.0
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362 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varcall/0.1.8_1 | 2022-09-01 |24.0
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363 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0 | 2022-09-01 |24.0
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364 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy2 | 2022-09-01 |24.0
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365 toolshed.g2.bx.psu.edu/repos/devteam/macs/peakcalling_macs/1.0.1 | 2022-09-01 |24.0
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366 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0 | 2022-09-01 |24.0
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367 toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.39.5.0 | 2022-09-01 |24.0
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368 toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.3+galaxy1 | 2022-09-01 |24.0
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371 toolshed.g2.bx.psu.edu/repos/iuc/mummer_nucmer/mummer_nucmer/4.0.0rc1+galaxy2 | 2022-09-01 |23.0
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372 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_DownsampleSam/2.18.2.1 | 2022-09-01 |23.0
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373 toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0 | 2022-09-01 |23.0
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374 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0 | 2022-09-01 |23.0
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375 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.9.1+galaxy2 | 2022-09-01 |23.0
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376 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.5 | 2022-09-01 |23.0
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377 toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 | 2022-09-01 |23.0
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378 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.7+galaxy0 | 2022-09-01 |23.0
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379 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy0 | 2022-09-01 |22.0
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380 toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2+galaxy1 | 2022-09-01 |22.0
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381 toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/2.4.2 | 2022-09-01 |22.0
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382 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.30.0+galaxy1 | 2022-09-01 |22.0
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383 interactive_tool_jupyter_notebook | 2022-09-01 |22.0
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385 toolshed.g2.bx.psu.edu/repos/iuc/raven/raven/1.8.0+galaxy0 | 2022-09-01 |22.0
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386 toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1+galaxy2 | 2022-09-01 |22.0
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387 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/aragorn_trna/0.6 | 2022-09-01 |22.0
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388 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_AddOrReplaceReadGroups/2.18.2.1 | 2022-09-01 |22.0
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389 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy0 | 2022-09-01 |22.0
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390 toolshed.g2.bx.psu.edu/repos/iuc/pathview/pathview/1.34.0+galaxy0 | 2022-09-01 |21.0
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391 toolshed.g2.bx.psu.edu/repos/iuc/prinseq/prinseq/0.20.4+galaxy2 | 2022-09-01 |21.0
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392 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.4 | 2022-09-01 |21.0
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393 toolshed.g2.bx.psu.edu/repos/galaxyp/pepquery/pepquery/1.6.2+galaxy1 | 2022-09-01 |21.0
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394 toolshed.g2.bx.psu.edu/repos/iuc/mageck_test/mageck_test/0.5.8.1 | 2022-09-01 |21.0
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395 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2+galaxy0 | 2022-09-01 |21.0
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396 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.3.1 | 2022-09-01 |21.0
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397 toolshed.g2.bx.psu.edu/repos/iuc/tximport/tximport/1.22.0 | 2022-09-01 |21.0
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398 toolshed.g2.bx.psu.edu/repos/iuc/newick_utils/newick_display/1.6+galaxy1 | 2022-09-01 |21.0
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399 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.5 | 2022-09-01 |21.0
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400 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.6+galaxy0 | 2022-09-01 |21.0
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401 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4 | 2022-09-01 |21.0
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402 toolshed.g2.bx.psu.edu/repos/iuc/jvarkit_wgscoverageplotter/jvarkit_wgscoverageplotter/20201223+galaxy0 | 2022-09-01 |21.0
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404 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9 | 2022-09-01 |20.0
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405 toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2 | 2022-09-01 |20.0
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406 toolshed.g2.bx.psu.edu/repos/bgruening/fastq_info/fastq_info/0.25.1+Galaxy0 | 2022-09-01 |20.0
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407 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.6 | 2022-09-01 |20.0
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408 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/3.6+galaxy0 | 2022-09-01 |20.0
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409 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.35.0+galaxy0 | 2022-09-01 |20.0
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410 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_partition/monocle3_partition/0.1.4+galaxy0 | 2022-09-01 |20.0
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411 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.3.2.0.1 | 2022-09-01 |20.0
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412 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_summary/1.0.1 | 2022-09-01 |20.0
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413 toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3+galaxy2 | 2022-09-01 |20.0
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414 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.0 | 2022-09-01 |20.0
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415 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.7.1+galaxy0 | 2022-09-01 |20.0
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419 toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9+galaxy0 | 2022-09-01 |19.0
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420 toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/1.3 | 2022-09-01 |19.0
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421 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.22.0 | 2022-09-01 |19.0
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423 toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.9.1+galaxy1 | 2022-09-01 |19.0
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424 toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 | 2022-09-01 |19.0
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425 toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/2.2.1.3 | 2022-09-01 |19.0
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426 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtofastq/2.27.1 | 2022-09-01 |19.0
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427 toolshed.g2.bx.psu.edu/repos/bgruening/cp_save_images/cp_save_images/3.1.9+galaxy1 | 2022-09-01 |19.0
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428 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/2.1.7+galaxy1 | 2022-09-01 |19.0
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429 toolshed.g2.bx.psu.edu/repos/iuc/graphlan/graphlan/1.0.0.0 | 2022-09-01 |19.0
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430 toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.2+galaxy0 | 2022-09-01 |18.0
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433 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/2.10.1+galaxy2 | 2022-09-01 |18.0
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435 toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9+galaxy1 | 2022-09-01 |18.0
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437 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.6+galaxy0 | 2022-09-01 |18.0
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438 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy4 | 2022-09-01 |18.0
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439 toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy1 | 2022-09-01 |18.0
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440 toolshed.g2.bx.psu.edu/repos/iuc/flash/flash/1.2.11.4 | 2022-09-01 |17.0
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441 toolshed.g2.bx.psu.edu/repos/bgruening/interproscan/interproscan/5.55-88.0+galaxy3 | 2022-09-01 |17.0
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442 toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2 | 2022-09-01 |17.0
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448 toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0 | 2022-09-01 |16.0
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451 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0 | 2022-09-01 |16.0
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452 toolshed.g2.bx.psu.edu/repos/devteam/vcfselectsamples/vcfselectsamples/1.0.0_rc1+galaxy0 | 2022-09-01 |16.0
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457 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/2.10.1+galaxy2 | 2022-09-01 |15.0
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459 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 | 2022-09-01 |15.0
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464 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.22.1+galaxy4 | 2022-09-01 |15.0
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465 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varextract/0.1.8_1 | 2022-09-01 |15.0
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467 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina/docking/1.2.3+galaxy0 | 2022-09-01 |14.0
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468 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.1 | 2022-09-01 |14.0
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469 toolshed.g2.bx.psu.edu/repos/iuc/trycycler_cluster/trycycler_cluster/0.5.3 | 2022-09-01 |14.0
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476 toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc1+galaxy0 | 2022-09-01 |14.0
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505 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.39.5.0 | 2022-09-01 |12.0
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513 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_vcf_filter/0.1.8_1 | 2022-09-01 |12.0
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518 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.39.5.0 | 2022-09-01 |12.0
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523 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0 | 2022-09-01 |12.0
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524 toolshed.g2.bx.psu.edu/repos/iuc/dada2_filterandtrim/dada2_filterAndTrim/1.20+galaxy0 | 2022-09-01 |12.0
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526 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.6+galaxy0 | 2022-09-01 |12.0
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527 toolshed.g2.bx.psu.edu/repos/iuc/seqkit_stats/seqkit_stats/2.2.0+galaxy0 | 2022-09-01 |12.0
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528 gbk_to_orf | 2022-09-01 |12.0
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529 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsd/bio3d_rmsd/2.3.4 | 2022-09-01 |12.0
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952 toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_otus/qiime_pick_otus/1.9.1.0 | 2022-09-01 |3.0
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967 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy2 | 2022-09-01 |2.0
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980 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy4 | 2022-09-01 |2.0
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1003 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/2020.03.4+galaxy0 | 2020-09-01 |15.0
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1004 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgdiff/2.1.1.20160309.1 | 2020-09-01 |15.0
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1005 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_violin/ggplot2_violin/2.2.1+galaxy0 | 2020-09-01 |15.0
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1006 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0 | 2020-09-01 |15.0
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1007 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/rxlr_motifs/0.0.14 | 2020-09-01 |15.0
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1008 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan_hclust_heatmap/metaphlan_hclust_heatmap/2.6.0.0 | 2020-09-01 |15.0
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1009 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.6.0+galaxy0 | 2020-09-01 |15.0
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1010 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_merge/vcftools_merge/0.1.1 | 2020-09-01 |15.0
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1011 toolshed.g2.bx.psu.edu/repos/devteam/fastq_manipulation/fastq_manipulation/1.1.5 | 2020-09-01 |15.0
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1012 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 | 2020-09-01 |15.0
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1013 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.2.0 | 2020-09-01 |15.0
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1014 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.4.3+galaxy0 | 2020-09-01 |15.0
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1015 liftOver1 | 2020-09-01 |15.0
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1016 toolshed.g2.bx.psu.edu/repos/iuc/raceid_clustering/raceid_clustering/3.1 | 2020-09-01 |15.0
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1017 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.22.1 | 2020-09-01 |15.0
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1018 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.1 | 2020-09-01 |14.0
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1019 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex/je_demultiplex/1.2.1 | 2020-09-01 |14.0
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1020 toolshed.g2.bx.psu.edu/repos/bgruening/prepare_ligands_for_docking/prepare_ligands_for_docking/3.1.1+galaxy0 | 2020-09-01 |14.0
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1021 toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/3.1 | 2020-09-01 |14.0
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1022 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy0 | 2020-09-01 |14.0
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1023 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0 | 2020-09-01 |14.0
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1024 toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.16.0 | 2020-09-01 |14.0
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1025 toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer/paralyzer/1.5 | 2020-09-01 |14.0
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1026 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg_parser/hcluster_sg_parser/0.2.1 | 2020-09-01 |14.0
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1027 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.29.2 | 2020-09-01 |14.0
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1028 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0 | 2020-09-01 |14.0
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1029 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/2.2.1 | 2020-09-01 |14.0
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1030 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0 | 2020-09-01 |14.0
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1031 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4 | 2020-09-01 |14.0
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1032 CONVERTER_bed_to_gff_0 | 2020-09-01 |14.0
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1033 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotviewpoint/hicexplorer_hicplotviewpoint/3.4.3.0 | 2020-09-01 |14.0
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1034 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_map/0.1.8_1 | 2020-09-01 |14.0
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1035 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy1 | 2020-09-01 |14.0
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1036 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.4.4.post1+galaxy2 | 2020-09-01 |14.0
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1037 toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_preprocessing/maldi_quant_preprocessing/1.18.0.3 | 2020-09-01 |14.0
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1038 toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.3.1 | 2020-09-01 |14.0
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1039 toolshed.g2.bx.psu.edu/repos/iuc/pureclip/pureclip/1.0.4 | 2020-09-01 |14.0
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1040 toolshed.g2.bx.psu.edu/repos/bgruening/wtdbg/wtdbg/1.2.8.1 | 2020-09-01 |14.0
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1041 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.3 | 2020-09-01 |14.0
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1042 toolshed.g2.bx.psu.edu/repos/iuc/qiime_multiple_join_paired_ends/qiime_multiple_join_paired_ends/1.9.1.0 | 2020-09-01 |14.0
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1043 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.4.3+galaxy0 | 2020-09-01 |14.0
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1044 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1 | 2020-09-01 |14.0
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1045 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_merge/bcftools_merge/1.10 | 2020-09-01 |14.0
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1046 toolshed.g2.bx.psu.edu/repos/galaxyp/gffcompare_to_bed/gffcompare_to_bed/0.2.1 | 2020-09-01 |13.0
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1047 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.4.3.0 | 2020-09-01 |13.0
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1049 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgpeakcall/2.1.1.20160309.0 | 2020-09-01 |13.0
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1050 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_randsample/2.1.1.20160309.1 | 2020-09-01 |13.0
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1051 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.6.0.0 | 2020-09-01 |13.0
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1052 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.10.1+galaxy2 | 2020-09-01 |13.0
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1053 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0+galaxy1 | 2020-09-01 |13.0
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1054 toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.2.3+galaxy0 | 2020-09-01 |13.0
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1055 toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20175.0 | 2020-09-01 |13.0
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1056 __DATA_FETCH__ | 2020-09-01 |13.0
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1057 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.3 | 2020-09-01 |13.0
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1058 toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.1 | 2020-09-01 |13.0
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1059 toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0 | 2020-09-01 |13.0
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1061 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignerposeclustering/MapAlignerPoseClustering/2.5+galaxy0 | 2020-09-01 |13.0
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1062 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/2.1.4.0 | 2020-09-01 |13.0
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1063 toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.10.0 | 2020-09-01 |13.0
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1064 toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/0.0.11 | 2020-09-01 |13.0
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1065 toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.0.1 | 2020-09-01 |12.0
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1066 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_walnut/encyclopedia_walnut/0.9.5.0 | 2020-09-01 |12.0
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1067 CONVERTER_vcf_to_tabix_0 | 2020-09-01 |12.0
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1068 interactive_tool_cellxgene | 2020-09-01 |12.0
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1069 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0 | 2020-09-01 |12.0
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1070 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotate/vcfannotate/1.0.0_rc3+galaxy0 | 2020-09-01 |12.0
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1071 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.3.0 | 2020-09-01 |12.0
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1073 CONVERTER_wig_to_bigwig | 2020-09-01 |12.0
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1074 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.4.4.post1+galaxy3 | 2020-09-01 |12.0
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1075 toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.9.9.0 | 2020-09-01 |12.0
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1076 toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/357 | 2020-09-01 |12.0
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1078 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.2.4 | 2020-09-01 |12.0
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1079 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/trnascan/0.4 | 2020-09-01 |12.0
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1080 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc1+galaxy0 | 2020-09-01 |12.0
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1081 toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/0.0.9 | 2020-09-01 |12.0
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1082 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy1 | 2020-09-01 |12.0
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1083 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/2.6.0.0 | 2020-09-01 |12.0
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1084 __BUILD_LIST__ | 2020-09-01 |12.0
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1085 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3 | 2020-09-01 |12.0
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1086 tombo_resquiggle | 2020-09-01 |12.0
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1087 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy1 | 2020-09-01 |12.0
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1088 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix_operations/deeptools_compute_matrix_operations/3.3.2.0.0 | 2020-09-01 |12.0
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1089 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_vcf_filter/0.1.8_1 | 2020-09-01 |12.0
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1091 toolshed.g2.bx.psu.edu/repos/iuc/qiime_assign_taxonomy/qiime_assign_taxonomy/1.9.1.0 | 2020-09-01 |12.0
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1092 toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2 | 2020-09-01 |12.0
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1093 methtools_calling | 2020-09-01 |12.0
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1094 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy0 | 2020-09-01 |11.0
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1095 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_splitter/fastq_paired_end_splitter/1.1.5 | 2020-09-01 |11.0
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1096 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgcmp/2.1.1.20160309.0 | 2020-09-01 |11.0
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1097 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6 | 2020-09-01 |11.0
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1098 toolshed.g2.bx.psu.edu/repos/iuc/raceid_trajectory/raceid_trajectory/3.1 | 2020-09-01 |11.0
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1099 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1 | 2020-09-01 |11.0
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1100 toolshed.g2.bx.psu.edu/repos/earlhaminst/blast_parser/blast_parser/0.1.2 | 2020-09-01 |11.0
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1101 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy0 | 2020-09-01 |11.0
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1102 toolshed.g2.bx.psu.edu/repos/devteam/sam2interval/sam2interval/1.0.2 | 2020-09-01 |11.0
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1103 toolshed.g2.bx.psu.edu/repos/iuc/mothur_biom_info/mothur_biom_info/1.39.5.0 | 2020-09-01 |11.0
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1104 toolshed.g2.bx.psu.edu/repos/devteam/megablast_wrapper/megablast_wrapper/1.2.0 | 2020-09-01 |11.0
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1105 CONVERTER_bz2_to_uncompressed | 2020-09-01 |11.0
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1106 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.4.3+galaxy1 | 2020-09-01 |11.0
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1107 toolshed.g2.bx.psu.edu/repos/iuc/stacks_refmap/stacks_refmap/1.46.0 | 2020-09-01 |11.0
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1108 toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 | 2020-09-01 |11.0
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1109 CONVERTER_vcf_to_bgzip_0 | 2020-09-01 |11.0
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1110 toolshed.g2.bx.psu.edu/repos/devteam/flanking_features/flanking_features_1/4.0.1 | 2020-09-01 |11.0
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1111 OpenSwathDecoyGenerator | 2020-09-01 |11.0
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1112 toolshed.g2.bx.psu.edu/repos/iuc/msaboot/msaboot/0.1.2 | 2020-09-01 |11.0
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1114 toolshed.g2.bx.psu.edu/repos/iuc/disco/disco/1.2.0 | 2020-09-01 |11.0
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1116 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.4.3.0 | 2020-09-01 |11.0
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1126 CONVERTER_interval_to_bigwig_0 | 2020-09-01 |10.0
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1127 toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1 | 2020-09-01 |10.0
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1129 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy1 | 2020-09-01 |10.0
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1130 interactive_tool_climate_notebook | 2020-09-01 |10.0
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1131 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy0 | 2020-09-01 |10.0
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1132 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpsblast_wrapper/2.10.1+galaxy0 | 2020-09-01 |10.0
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1133 toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.5 | 2020-09-01 |10.0
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1134 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 | 2020-09-01 |10.0
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1135 interactive_tool_pyiron | 2020-09-01 |10.0
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1136 toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.39.5.0 | 2020-09-01 |10.0
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1137 toolshed.g2.bx.psu.edu/repos/devteam/dna_filtering/histogram_rpy/1.0.3 | 2020-09-01 |10.0
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1138 toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_groups/mothur_merge_groups/1.39.5.0 | 2020-09-01 |10.0
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1139 toolshed.g2.bx.psu.edu/repos/iuc/trinity_abundance_estimates_to_matrix/trinity_abundance_estimates_to_matrix/2.9.1 | 2020-09-01 |10.0
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1140 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_mapping/seq_filter_by_mapping/0.0.6 | 2020-09-01 |10.0
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1141 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicconvertformat/hicexplorer_hicconvertformat/3.4.3.0 | 2020-09-01 |10.0
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1142 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/1.0.0 | 2020-09-01 |10.0
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1143 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.2 | 2020-09-01 |10.0
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1144 toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/Univariate/2.2.4 | 2020-09-01 |10.0
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1145 toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8 | 2020-09-01 |10.0
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1146 toolshed.g2.bx.psu.edu/repos/bgruening/find_subsequences/bg_find_subsequences/0.2 | 2020-09-01 |10.0
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1147 Extract_features1 | 2020-09-01 |10.0
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1148 toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2 | 2020-09-01 |10.0
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1149 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca_visualize/bio3d_pca_visualize/2.3.4 | 2020-09-01 |10.0
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1150 toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2 | 2020-09-01 |9.0
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1151 toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/0.4 | 2020-09-01 |9.0
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1152 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2c+galaxy1 | 2020-09-01 |9.0
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1153 toolshed.g2.bx.psu.edu/repos/iuc/qiime_collapse_samples/qiime_collapse_samples/1.9.1.0 | 2020-09-01 |9.0
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1154 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_rnadigestor/RNADigestor/2.5+galaxy0 | 2020-09-01 |9.0
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1155 toolshed.g2.bx.psu.edu/repos/galaxyp/flashlfq/flashlfq/1.0.3.0 | 2020-09-01 |9.0
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1156 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6 | 2020-09-01 |9.0
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1157 hgv_david | 2020-09-01 |9.0
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1158 toolshed.g2.bx.psu.edu/repos/galaxyp/mz_to_sqlite/mz_to_sqlite/2.0.4+galaxy1 | 2020-09-01 |9.0
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1159 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.3.1+galaxy0 | 2020-09-01 |9.0
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1160 toolshed.g2.bx.psu.edu/repos/peterjc/blastxml_to_top_descr/blastxml_to_top_descr/0.0.9 | 2020-09-01 |9.0
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1161 toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4 | 2020-09-01 |9.0
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1162 toolshed.g2.bx.psu.edu/repos/iuc/merge_metaphlan_tables/merge_metaphlan_tables/2.6.0.0 | 2020-09-01 |9.0
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1163 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_esearch/ncbi_eutils_esearch/1.2 | 2020-09-01 |9.0
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1164 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_annotatebed/2.29.2 | 2020-09-01 |9.0
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1165 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/0.1.0 | 2020-09-01 |9.0
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1166 toolshed.g2.bx.psu.edu/repos/melpetera/tablemerge/tablemerge/1.0.1 | 2020-09-01 |9.0
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1167 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg/hcluster_sg/0.5.1.1 | 2020-09-01 |9.0
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1168 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.6.0+galaxy0 | 2020-09-01 |9.0
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1169 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.3.1+galaxy0 | 2020-09-01 |9.0
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1170 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_searchtolib/encyclopedia_searchtolib/0.9.5.0 | 2020-09-01 |9.0
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1171 toolshed.g2.bx.psu.edu/repos/galaxyp/percolator/percolator_input_converters/3.1 | 2020-09-01 |9.0
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1172 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cooccurrence/mothur_cooccurrence/1.39.5.0 | 2020-09-01 |9.0
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1173 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4 | 2020-09-01 |9.0
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1174 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy1 | 2020-09-01 |9.0
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1175 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.22.1 | 2020-09-01 |9.0
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1176 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.3.0 | 2020-09-01 |8.0
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1177 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.3.0 | 2020-09-01 |8.0
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1178 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.6.0+galaxy0 | 2020-09-01 |8.0
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1179 toolshed.g2.bx.psu.edu/repos/galaxyp/mz_to_sqlite/mz_to_sqlite/2.0.4 | 2020-09-01 |8.0
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1181 toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/1.3 | 2020-09-01 |8.0
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1182 toolshed.g2.bx.psu.edu/repos/bgruening/fpocket/fpocket/3.1.4.2+galaxy0 | 2020-09-01 |8.0
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1183 toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_phmmer/0.1.0 | 2020-09-01 |8.0
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1184 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.11 | 2020-09-01 |8.0
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1185 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13 | 2020-09-01 |8.0
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1186 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sra_pileup/2.10.3 | 2020-09-01 |8.0
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1187 interactive_tool_guacamole_desktop | 2020-09-01 |8.0
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1188 CONVERTER_bed_to_bgzip_0 | 2020-09-01 |8.0
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1189 toolshed.g2.bx.psu.edu/repos/iuc/humann2_regroup_table/humann2_regroup_table/0.11.1.0 | 2020-09-01 |8.0
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1190 toolshed.g2.bx.psu.edu/repos/bgruening/minced/minced/0.1.5 | 2020-09-01 |8.0
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1191 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.4.4.post1+galaxy2 | 2020-09-01 |8.0
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1192 CONVERTER_bed_to_fli_0 | 2020-09-01 |8.0
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1194 toolshed.g2.bx.psu.edu/repos/iuc/mageck_mle/mageck_mle/0.5.8.1 | 2020-09-01 |8.0
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1196 toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.3+galaxy0 | 2020-09-01 |8.0
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1204 toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2 | 2020-09-01 |8.0
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1205 toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/3.3 | 2020-09-01 |8.0
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1208 toolshed.g2.bx.psu.edu/repos/devteam/principal_component_analysis/pca1/1.0.2 | 2020-09-01 |7.0
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1209 toolshed.g2.bx.psu.edu/repos/galaxyp/custom_pro_db/custom_pro_db/1.22.0 | 2020-09-01 |7.0
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1210 toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0 | 2020-09-01 |7.0
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1211 toolshed.g2.bx.psu.edu/repos/earlhaminst/t_coffee/t_coffee/11.0.8_1 | 2020-09-01 |7.0
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1212 toolshed.g2.bx.psu.edu/repos/devteam/vcfprimers/vcfprimers/1.0.0_rc3+galaxy0 | 2020-09-01 |7.0
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1213 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_filter_cells/seurat_filter_cells/3.1.1+galaxy0 | 2020-09-01 |7.0
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1214 toolshed.g2.bx.psu.edu/repos/bgruening/graphmap_align/graphmap_align/0.5.2 | 2020-09-01 |7.0
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1215 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_db/metaquantome_db/1.0.0-0 | 2020-09-01 |7.0
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1216 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_filter/openbabel_filter/3.1.1+galaxy0 | 2020-09-01 |7.0
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1217 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_quantify/encyclopedia_quantify/0.9.5.0 | 2020-09-01 |7.0
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1218 toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2 | 2020-09-01 |7.0
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1219 toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.1.5 | 2020-09-01 |7.0
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1220 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.4.4.0 | 2020-09-01 |7.0
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1221 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome/mothur_get_coremicrobiome/1.39.5.0 | 2020-09-01 |7.0
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1222 toolshed.g2.bx.psu.edu/repos/iuc/artic_minion/artic_minion/1.1.3+galaxy0 | 2020-09-01 |7.0
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1223 toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.0.1 | 2020-09-01 |7.0
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1224 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.6.0+galaxy0 | 2020-09-01 |7.0
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1225 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.3 | 2020-09-01 |7.0
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1226 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina/docking/0.3.0 | 2020-09-01 |7.0
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1227 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtoigv/2.29.2 | 2020-09-01 |7.0
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1228 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_receptor/prepare_receptor/0.1.0 | 2020-09-01 |7.0
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1229 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_coverage/deeptools_plot_coverage/3.3.2.0.0 | 2020-09-01 |7.0
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1230 toolshed.g2.bx.psu.edu/repos/iuc/jq/jq/1.0 | 2020-09-01 |7.0
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1231 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.4.3.0 | 2020-09-01 |7.0
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1232 toolshed.g2.bx.psu.edu/repos/devteam/scatterplot/scatterplot_rpy/1.0.3 | 2020-09-01 |7.0
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1233 toolshed.g2.bx.psu.edu/repos/rnateam/piranha/piranha/0.1.0 | 2020-09-01 |7.0
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1234 toolshed.g2.bx.psu.edu/repos/galaxyp/translate_bed/translate_bed/0.1.0 | 2020-09-01 |7.0
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1235 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.19 | 2020-09-01 |7.0
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1236 toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic/varscan_somatic/2.4.3.6 | 2020-09-01 |7.0
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1237 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy2 | 2020-09-01 |7.0
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1238 toolshed.g2.bx.psu.edu/repos/eschen42/w4mjoinpn/w4mjoinpn/0.98.2 | 2020-09-01 |7.0
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1240 toolshed.g2.bx.psu.edu/repos/crs4/bwa_mem/bwa_mem/0.8.0 | 2020-09-01 |7.0
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1241 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_NormalizeFasta/2.18.2.1 | 2020-09-01 |6.0
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1242 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_md/gmx_md/2019.1 | 2020-09-01 |6.0
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1243 toolshed.g2.bx.psu.edu/repos/iuc/sniffles/sniffles/1.0.12+galaxy0 | 2020-09-01 |6.0
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1244 toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.9.1 | 2020-09-01 |6.0
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1245 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy0 | 2020-09-01 |6.0
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1246 toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_pairwise/0.6.4 | 2020-09-01 |6.0
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1247 CONVERTER_bed_to_tabix_0 | 2020-09-01 |6.0
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1248 toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map/bed_to_protein_map/0.2.0 | 2020-09-01 |6.0
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1249 toolshed.g2.bx.psu.edu/repos/galaxyp/peptide_genomic_coordinate/peptide_genomic_coordinate/0.1.1 | 2020-09-01 |6.0
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1250 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_cosine_analysis/mdanalysis_cosine_analysis/1.0.0+galaxy0 | 2020-09-01 |6.0
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1251 toolshed.g2.bx.psu.edu/repos/iuc/mothur_normalize_shared/mothur_normalize_shared/1.39.5.0 | 2020-09-01 |6.0
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1252 CONVERTER_fasta_to_2bit | 2020-09-01 |6.0
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1253 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_makewindowsbed/2.29.2 | 2020-09-01 |6.0
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1254 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.2 | 2020-09-01 |6.0
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1255 toolshed.g2.bx.psu.edu/repos/iuc/kallisto_pseudo/kallisto_pseudo/0.46.0.1 | 2020-09-01 |6.0
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1256 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_prepare_reference/1.1.17 | 2020-09-01 |6.0
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1257 toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.2 | 2020-09-01 |6.0
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1258 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: megamerger53/5.0.0.1 | 2020-09-01 |6.0
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1259 toolshed.g2.bx.psu.edu/repos/bebatut/format_metaphlan2_output/format_metaphlan2_output/0.1.0 | 2020-09-01 |6.0
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1261 toolshed.g2.bx.psu.edu/repos/rnateam/rnashapes/RNAshapes/3.3.0 | 2020-09-01 |6.0
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1264 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.9.9.0 | 2020-09-01 |6.0
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1265 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.3.0 | 2020-09-01 |6.0
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1267 toolshed.g2.bx.psu.edu/repos/bgruening/augustus_training/augustus_training/3.3.3 | 2020-09-01 |6.0
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1268 bwtool-lift | 2020-09-01 |6.0
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1269 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.3.0 | 2020-09-01 |6.0
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1270 toolshed.g2.bx.psu.edu/repos/iuc/humann2_rename_table/humann2_rename_table/0.11.1.0 | 2020-09-01 |6.0
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1271 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_chimera_detection/2.8.3.0 | 2020-09-01 |6.0
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1272 toolshed.g2.bx.psu.edu/repos/imgteam/2d_histogram_equalization/ip_histogram_equalization/0.0.1 | 2020-09-01 |6.0
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1273 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.4.4.0 | 2020-09-01 |6.0
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1274 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.3.0 | 2020-09-01 |6.0
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1275 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.3.0 | 2020-09-01 |6.0
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1276 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy0 | 2020-09-01 |6.0
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1277 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1 | 2020-09-01 |6.0
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1278 toolshed.g2.bx.psu.edu/repos/iuc/mixcr_analyze/mixcr_analyze/3.0.5.0 | 2020-09-01 |6.0
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1279 toolshed.g2.bx.psu.edu/repos/galaxyp/pep_pointer/pep_pointer/0.1.3 | 2020-09-01 |6.0
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1280 toolshed.g2.bx.psu.edu/repos/iuc/drep_dereplicate/drep_dereplicate/2.5.4.0 | 2020-09-01 |6.0
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1281 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc3+galaxy0 | 2020-09-01 |6.0
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1282 toolshed.g2.bx.psu.edu/repos/iuc/column_remove_by_header/column_remove_by_header/0.0.1 | 2020-09-01 |6.0
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1283 toolshed.g2.bx.psu.edu/repos/devteam/fastx_barcode_splitter/cshl_fastx_barcode_splitter/1.0.1 | 2020-09-01 |6.0
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1284 toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.12.2 | 2020-09-01 |6.0
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1285 toolshed.g2.bx.psu.edu/repos/iuc/spaln/spaln/2.3.2+galaxy0 | 2020-09-01 |6.0
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1286 Paste1 | 2020-09-01 |6.0
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1287 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.3.0 | 2020-09-01 |6.0
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1288 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.5.21+galaxy0 | 2020-09-01 |6.0
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1289 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0 | 2020-09-01 |6.0
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1290 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.4.4.1 | 2020-09-01 |6.0
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1291 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.3.0 | 2020-09-01 |6.0
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1292 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.1 | 2020-09-01 |6.0
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1293 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.3.0 | 2020-09-01 |6.0
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1313 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.3.0 | 2020-09-01 |5.0
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1317 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy1 | 2020-09-01 |5.0
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1318 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/3.1.1+galaxy0 | 2020-09-01 |5.0
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1319 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.3.0 | 2020-09-01 |5.0
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1321 toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.14+galaxy0 | 2020-09-01 |5.0
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1322 toolshed.g2.bx.psu.edu/repos/iuc/mothur_metastats/mothur_metastats/1.39.5.0 | 2020-09-01 |5.0
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1323 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_nvt/gmx_nvt/2018.2 | 2020-09-01 |5.0
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1324 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy7 | 2020-09-01 |5.0
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1325 toolshed.g2.bx.psu.edu/repos/jjohnson/samtools_filter/samtools_filter/1.1.1 | 2020-09-01 |5.0
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1327 toolshed.g2.bx.psu.edu/repos/devteam/vcf_filter/vcf_filter/1.0.0 | 2020-09-01 |5.0
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1329 toolshed.g2.bx.psu.edu/repos/iuc/xpath/xpath/1.0.0 | 2020-09-01 |5.0
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1330 toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.3.1 | 2020-09-01 |5.0
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1331 toolshed.g2.bx.psu.edu/repos/iuc/bcftools/bcftools_view/0.1.19.0 | 2020-09-01 |5.0
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1332 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.5+galaxy0 | 2020-09-01 |5.0
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1333 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2 | 2020-09-01 |5.0
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1335 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.13 | 2020-09-01 |5.0
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1337 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.10.1+galaxy0 | 2020-09-01 |5.0
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1338 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy2 | 2020-09-01 |5.0
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1341 toolshed.g2.bx.psu.edu/repos/iuc/pick_open_reference_otus/pick_open_reference_otus/1.9.1.0 | 2020-09-01 |5.0
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1342 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.6.0+galaxy0 | 2020-09-01 |5.0
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1343 toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4 | 2020-09-01 |5.0
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1344 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.1.0 | 2020-09-01 |5.0
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1345 toolshed.g2.bx.psu.edu/repos/devteam/subtract_query/subtract_query1/0.1 | 2020-09-01 |5.0
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1346 rnalfoldz | 2020-09-01 |5.0
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1348 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicinfo/hicexplorer_hicinfo/3.4.3.0 | 2020-09-01 |5.0
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1350 toolshed.g2.bx.psu.edu/repos/iuc/mothur_lefse/mothur_lefse/1.39.5.0 | 2020-09-01 |5.0
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1379 toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5+galaxy1 | 2020-09-01 |4.0
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1380 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.3.3 | 2020-09-01 |4.0
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1381 toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/0.0.3 | 2020-09-01 |4.0
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1382 gene2exon1 | 2020-09-01 |4.0
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1383 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_rmsd_clustering/biomd_rmsd_clustering/0.1.5.2+galaxy0 | 2020-09-01 |4.0
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1385 toolshed.g2.bx.psu.edu/repos/iuc/mitos/mitos/1.0.5 | 2020-09-01 |4.0
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1388 toolshed.g2.bx.psu.edu/repos/marie-tremblay-metatoul/normalization/normalization/2.0.1 | 2020-09-01 |4.0
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1389 toolshed.g2.bx.psu.edu/repos/bgruening/circexplorer/circexplorer/1.1.9.0 | 2020-09-01 |4.0
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1390 toolshed.g2.bx.psu.edu/repos/iuc/poretools_qualdist/poretools_qualdist/0.6.1a1.0 | 2020-09-01 |4.0
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1391 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_md/gmx_md/2018.2 | 2020-09-01 |4.0
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1392 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0 | 2020-09-01 |4.0
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1393 toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.1.0 | 2020-09-01 |4.0
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1394 CONVERTER_sam_to_bigwig_0 | 2020-09-01 |4.0
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1395 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.5+galaxy0 | 2020-09-01 |4.0
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1396 bfast_wrapper | 2020-09-01 |4.0
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1397 toolshed.g2.bx.psu.edu/repos/bjoern-gruening/sed_wrapper/sed_stream_editor/0.0.1 | 2020-09-01 |4.0
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1398 toolshed.g2.bx.psu.edu/repos/iuc/snp_sites/snp_sites/2.5.1+galaxy0 | 2020-09-01 |4.0
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1399 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/fastq_trimmer/1.1.1 | 2020-09-01 |4.0
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1400 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 | 2020-09-01 |4.0
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1401 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_fasta_to_prosit_csv/encyclopedia_fasta_to_prosit_csv/0.9.5.0 | 2020-09-01 |4.0
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1402 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.13.0 | 2020-09-01 |4.0
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1403 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.3.3 | 2020-09-01 |4.0
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1404 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 | 2020-09-01 |4.0
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1405 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.1 | 2020-09-01 |4.0
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1406 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_clusterbed/2.29.2 | 2020-09-01 |4.0
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1407 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/0.7.0.3 | 2020-09-01 |4.0
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1408 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_shufflebed/2.29.2 | 2020-09-01 |4.0
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1409 toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_tsne/scater_plot_tsne/1.12.2 | 2020-09-01 |4.0
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1410 toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_upset/0.6.4 | 2020-09-01 |4.0
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1411 toolshed.g2.bx.psu.edu/repos/iuc/proteinortho_summary/proteinortho_summary/6.0.14+galaxy2.9.1 | 2020-09-01 |4.0
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1412 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_enrichment/deeptools_plot_enrichment/3.3.2.0.0 | 2020-09-01 |4.0
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1413 toolshed.g2.bx.psu.edu/repos/devteam/short_reads_figure_score/quality_score_distribution/1.0.2 | 2020-09-01 |4.0
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1414 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 | 2020-09-01 |4.0
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1415 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2.2+galaxy1 | 2020-09-01 |4.0
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1416 toolshed.g2.bx.psu.edu/repos/iuc/qiime_plot_taxa_summary/qiime_plot_taxa_summary/1.9.1.0 | 2020-09-01 |4.0
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1417 toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.1.1 | 2020-09-01 |4.0
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1418 toolshed.g2.bx.psu.edu/repos/iuc/pipelign/pipelign/0.2+galaxy0 | 2020-09-01 |4.0
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1419 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.4+galaxy1 | 2020-09-01 |4.0
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1420 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_list/0.9.8 | 2020-09-01 |4.0
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1421 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.5+galaxy0 | 2020-09-01 |4.0
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1422 toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.1.1 | 2020-09-01 |4.0
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1424 toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.1.2 | 2020-09-01 |4.0
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1425 toolshed.g2.bx.psu.edu/repos/iuc/maker_map_ids/maker_map_ids/2.31.10 | 2020-09-01 |4.0
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1426 toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/idchoice/18.01 | 2020-09-01 |4.0
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1427 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardInsertSize/1.56.0 | 2020-09-01 |4.0
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1429 toolshed.g2.bx.psu.edu/repos/rnateam/pipmir/pipmir/0.1.0 | 2020-09-01 |3.0
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1431 toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1 | 2020-09-01 |3.0
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1432 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 | 2020-09-01 |3.0
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1434 CONVERTER_interval_to_tabix_0 | 2020-09-01 |3.0
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1436 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_create_seurat_object/seurat_create_seurat_object/2.3.1+galaxy0 | 2020-09-01 |3.0
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1437 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastx_wrapper/2.10.1+galaxy0 | 2020-09-01 |3.0
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1439 CONVERTER_interval_to_bgzip_0 | 2020-09-01 |3.0
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1440 toolshed.g2.bx.psu.edu/repos/iuc/bp_genbank2gff3/bp_genbank2gff3/1.1 | 2020-09-01 |3.0
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1441 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/2.8.3.0 | 2020-09-01 |3.0
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1442 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_slice/vcftools_slice/0.1 | 2020-09-01 |3.0
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1443 toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_phylogeny/qiime_make_phylogeny/1.9.1.0 | 2020-09-01 |3.0
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1444 toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ/spocc_occ/0.9.0 | 2020-09-01 |3.0
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1445 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/promoter2/0.0.12 | 2020-09-01 |3.0
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1446 toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes/qiime_extract_barcodes/1.9.1.0 | 2020-09-01 |3.0
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1447 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.6.0+galaxy0 | 2020-09-01 |3.0
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1448 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varextract/0.1.8_1 | 2020-09-01 |3.0
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1449 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/0.0.1 | 2020-09-01 |3.0
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1450 gff_filter_by_attribute | 2020-09-01 |3.0
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1451 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.2 | 2020-09-01 |3.0
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1452 toolshed.g2.bx.psu.edu/repos/rnateam/dorina/dorina_search/1.0.0 | 2020-09-01 |3.0
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1453 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2 | 2020-09-01 |3.0
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1454 toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.1 | 2020-09-01 |3.0
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1455 toolshed.g2.bx.psu.edu/repos/devteam/fasta_nucleotide_changer/cshl_fasta_nucleotides_changer/1.0.2 | 2020-09-01 |3.0
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1456 toolshed.g2.bx.psu.edu/repos/bgruening/join_files_on_column_fuzzy/join_files_on_column_fuzzy/1.0.1 | 2020-09-01 |3.0
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1457 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.3.2+galaxy1 | 2020-09-01 |3.0
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1458 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0 | 2020-09-01 |3.0
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1459 toolshed.g2.bx.psu.edu/repos/computationaltranscriptomics/glassgo/glassgo/1.5.2 | 2020-09-01 |3.0
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1460 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.4+galaxy0 | 2020-09-01 |3.0
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1461 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_create/monocle3_create/0.1.4+galaxy2 | 2020-09-01 |3.0
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1462 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.2 | 2020-09-01 |3.0
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1463 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4.4.post1+galaxy3 | 2020-09-01 |3.0
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1464 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3 | 2020-09-01 |3.0
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1465 toolshed.g2.bx.psu.edu/repos/devteam/fastx_nucleotides_distribution/cshl_fastx_nucleotides_distribution/1.0.1 | 2020-09-01 |3.0
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1466 toolshed.g2.bx.psu.edu/repos/galaxyp/mt2mq/mt2mq/1.1.0 | 2020-09-01 |3.0
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1467 intermine | 2020-09-01 |3.0
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1468 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.3 | 2020-09-01 |3.0
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1469 toolshed.g2.bx.psu.edu/repos/devteam/data_manager_twobit_builder/twobit_builder_data_manager/0.0.4 | 2020-09-01 |3.0
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1470 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.22.1+galaxy2 | 2020-09-01 |3.0
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1471 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 | 2020-09-01 |3.0
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1472 CONVERTER_gff_to_interval_index_0 | 2020-09-01 |3.0
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1473 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund_to_tabular/cummerbund_to_cuffdiff/1.0.1 | 2020-09-01 |3.0
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1474 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.4.4.post1+galaxy3 | 2020-09-01 |3.0
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1475 toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0beta2+galaxy0 | 2020-09-01 |3.0
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1476 toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1 | 2020-09-01 |3.0
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1477 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.12.0+galaxy0 | 2020-09-01 |3.0
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1478 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_editconf/gmx_editconf/2019.1.4 | 2020-09-01 |3.0
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1479 toolshed.g2.bx.psu.edu/repos/iuc/mothur_venn/mothur_venn/1.36.1.0 | 2020-09-01 |3.0
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1480 toolshed.g2.bx.psu.edu/repos/tgac/miranda/miranda/3.3a | 2020-09-01 |3.0
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1481 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsd/bio3d_rmsd/2.3 | 2020-09-01 |3.0
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1483 toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.3 | 2020-09-01 |3.0
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1485 toolshed.g2.bx.psu.edu/repos/peterjc/seq_composition/seq_composition/0.0.5 | 2020-09-01 |3.0
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1496 toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_dbkeys_all_fasta/data_manager_fetch_genome_all_fasta_dbkey/0.0.2 | 2020-09-01 |3.0
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1504 toolshed.g2.bx.psu.edu/repos/peterjc/mummer/mummerplot_wrapper/0.0.7 | 2020-09-01 |3.0
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1505 toolshed.g2.bx.psu.edu/repos/imgteam/overlay_segmentation_mask/ip_overlay_segmentation/0.0.6 | 2020-09-01 |3.0
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1506 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_cluster_kegg/1.0.0 | 2020-09-01 |3.0
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1507 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaup/viennarna_rnaup/2.2.10.0 | 2020-09-01 |3.0
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1509 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_concat/bcftools_concat/1.10 | 2020-09-01 |3.0
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1510 toolshed.g2.bx.psu.edu/repos/iuc/trinity_super_transcripts/trinity_super_transcripts/2.9.1 | 2020-09-01 |3.0
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1511 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varreport/0.1.8_1 | 2020-09-01 |3.0
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1512 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4 | 2020-09-01 |3.0
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1513 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_calculate_expression/1.1.17 | 2020-09-01 |3.0
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1514 toolshed.g2.bx.psu.edu/repos/iuc/poretools_tabular/poretools_tabular/0.6.1a1.0 | 2020-09-01 |3.0
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1515 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardASMetrics/1.56.0 | 2020-09-01 |3.0
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1516 toolshed.g2.bx.psu.edu/repos/anton/vcf2tsv/vcf2tsv/0.0.1 | 2020-09-01 |3.0
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1517 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: fuzznuc37/5.0.2 | 2020-09-01 |3.0
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1518 toolshed.g2.bx.psu.edu/repos/iuc/describe_samples/describe_samples/2.8.4 | 2020-09-01 |3.0
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1519 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.29.2 | 2020-09-01 |3.0
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1520 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_tableviewer/0.69.8+galaxy7 | 2020-09-01 |3.0
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1521 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_stacked/0.69.8+galaxy7 | 2020-09-01 |3.0
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1523 velvetg | 2020-09-01 |3.0
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1524 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_rebase/0.1.8_1 | 2020-09-01 |3.0
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1525 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: geecee41/5.0.0 | 2020-09-01 |3.0
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1526 toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.4 | 2020-09-01 |3.0
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1527 gtf_filter_by_attribute_values_list | 2020-09-01 |3.0
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1528 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.4.3+galaxy9 | 2020-09-01 |3.0
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1529 toolshed.g2.bx.psu.edu/repos/devteam/gi2taxonomy/Fetch Taxonomic Ranks/1.1.0 | 2020-09-01 |3.0
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1530 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varcall/0.1.8_1 | 2020-09-01 |3.0
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1531 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.9+galaxy1 | 2020-09-01 |3.0
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1532 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_covstats/0.1.8_1 | 2020-09-01 |3.0
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1533 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.6.0.0 | 2020-09-01 |3.0
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1534 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_predictd/2.1.1.20160309.1 | 2020-09-01 |3.0
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1535 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpsift_vartype/4.3.1 | 2020-09-01 |3.0
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1536 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.3 | 2020-09-01 |2.0
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1537 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/0.4.1 | 2020-09-01 |2.0
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1539 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.3 | 2020-09-01 |2.0
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1540 toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmcomm/pampa_glmcomm/0.0.1 | 2020-09-01 |2.0
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1565 toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.12.2 | 2020-09-01 |2.0
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1566 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.4.0.1 | 2020-09-01 |2.0
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1567 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.19 | 2020-09-01 |2.0
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1568 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_svg_depiction/openbabel_svg_depiction/3.1.1+galaxy0 | 2020-09-01 |2.0
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1569 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.13 | 2020-09-01 |2.0
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1570 toolshed.g2.bx.psu.edu/repos/iuc/idr/idr/2.0.3 | 2020-09-01 |2.0
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1571 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.1.0 | 2020-09-01 |2.0
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1572 toolshed.g2.bx.psu.edu/repos/rnateam/selectsequencesfrommsa/selectsequencesfrommsa/1.0.5 | 2020-09-01 |2.0
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1573 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.4+galaxy1 | 2020-09-01 |2.0
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1574 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_isec/vcftools_isec/0.1.1 | 2020-09-01 |2.0
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1575 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.2.2+galaxy0 | 2020-09-01 |2.0
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1576 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 | 2020-09-01 |2.0
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1577 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_genprop/openbabel_genProp/3.1.1+galaxy0 | 2020-09-01 |2.0
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1578 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0 | 2020-09-01 |2.0
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1579 toolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/gff_to_prot/3.0.2+galaxy0 | 2020-09-01 |2.0
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1580 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.4 | 2020-09-01 |2.0
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1581 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst_list/2.19.0 | 2020-09-01 |2.0
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1582 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy6 | 2020-09-01 |2.0
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1583 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0.8.2 | 2020-09-01 |2.0
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1584 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.3.2+galaxy1 | 2020-09-01 |2.0
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1585 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.0.0 | 2020-09-01 |2.0
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1586 toolshed.g2.bx.psu.edu/repos/iuc/enasearch_retrieve_data/enasearch_retrieve_data/0.1.1.0 | 2020-09-01 |2.0
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1587 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_egquery/ncbi_eutils_egquery/1.2 | 2020-09-01 |2.0
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1588 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.4.3+galaxy9 | 2020-09-01 |2.0
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1589 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.3.2+galaxy1 | 2020-09-01 |2.0
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1590 toolshed.g2.bx.psu.edu/repos/devteam/weblogo3/rgweblogo3/3.5.0 | 2020-09-01 |2.0
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1591 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.3 | 2020-09-01 |2.0
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1592 gff_to_sequence | 2020-09-01 |2.0
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1593 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_relabund/mothur_get_relabund/1.39.5.0 | 2020-09-01 |2.0
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1594 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_cmfinder/cmFinder/0.3 | 2020-09-01 |2.0
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1595 sequence_convert | 2020-09-01 |2.0
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1596 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_junction_annotation/2.6.4.1 | 2020-09-01 |2.0
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1597 toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/2.1.2 | 2020-09-01 |2.0
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1598 toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 | 2020-09-01 |2.0
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1599 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0 | 2020-09-01 |2.0
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1600 toolshed.g2.bx.psu.edu/repos/crs4/ssake/ssake/0.0.10 | 2020-09-01 |2.0
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1601 toolshed.g2.bx.psu.edu/repos/tyty/structurefold/iterative_map_pipeline/1.0 | 2020-09-01 |2.0
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1602 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_sample/metaquantome_sample/2.0.0-0 | 2020-09-01 |2.0
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1603 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0 | 2020-09-01 |2.0
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1604 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.5+galaxy0 | 2020-09-01 |2.0
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1605 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.5.2b-0 | 2020-09-01 |2.0
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1606 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnapaln/viennarna_rnapaln/2.2.10.0 | 2020-09-01 |2.0
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1607 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_reldistbed/2.29.2 | 2020-09-01 |2.0
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1608 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69 | 2020-09-01 |2.0
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1609 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 | 2020-09-01 |2.0
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1610 toolshed.g2.bx.psu.edu/repos/iuc/cat_contigs/cat_contigs/5.0.3.1 | 2020-09-01 |2.0
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1611 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/tmhmm2/0.0.16 | 2020-09-01 |2.0
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1612 toolshed.g2.bx.psu.edu/repos/iuc/bio_hansel/bio_hansel/0.1.0 | 2020-09-01 |2.0
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1613 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0 | 2020-09-01 |2.0
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1614 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1 | 2020-09-01 |2.0
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1615 toolshed.g2.bx.psu.edu/repos/devteam/count_covariates/gatk_count_covariates/0.0.5 | 2020-09-01 |2.0
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1616 toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.7.0+galaxy0 | 2020-09-01 |2.0
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1617 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.3.2+galaxy0 | 2020-09-01 |2.0
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1618 wc_gnu | 2020-09-01 |2.0
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1619 toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2 | 2020-09-01 |2.0
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1620 toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map/bed_to_protein_map/0.1.0 | 2020-09-01 |2.0
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1621 toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.1 | 2020-09-01 |2.0
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1622 gbk_to_orf | 2020-09-01 |2.0
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1623 toolshed.g2.bx.psu.edu/repos/iuc/control_freec/control_freec/11.6+galaxy1 | 2020-09-01 |2.0
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1624 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_tin/2.6.4.1 | 2020-09-01 |2.0
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1625 toolshed.g2.bx.psu.edu/repos/bgruening/qed/ctb_silicos_qed/2019.03.1+galaxy0 | 2020-09-01 |2.0
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1626 toolshed.g2.bx.psu.edu/repos/imgteam/2d_split_binaryimage_by_watershed/ip_2d_split_binaryimage_by_watershed/0.0.1 | 2020-09-01 |2.0
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1627 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6 | 2020-09-01 |2.0
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1628 genbank_to_gff | 2020-09-01 |2.0
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1630 toolshed.g2.bx.psu.edu/repos/bgruening/keras_model_builder/keras_model_builder/0.5.0 | 2020-09-01 |2.0
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1631 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.1 | 2020-09-01 |2.0
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1632 toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_barcodes/bctools_extract_barcodes/0.2.2 | 2020-09-01 |2.0
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1633 toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.3 | 2020-09-01 |2.0
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1634 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_boxplot/cshl_fastq_quality_boxplot/1.0.1 | 2020-09-01 |2.0
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1636 toolshed.g2.bx.psu.edu/repos/iuc/gemini_amend/gemini_amend/0.20.1 | 2020-09-01 |2.0
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1637 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.4.0.0 | 2020-09-01 |2.0
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1638 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.2 | 2020-09-01 |2.0
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1639 toolshed.g2.bx.psu.edu/repos/iuc/poretools_stats/poretools_stats/0.6.1a1.0 | 2020-09-01 |2.0
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1640 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0 | 2020-09-01 |2.0
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1641 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpstblastn_wrapper/2.10.1+galaxy0 | 2020-09-01 |2.0
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1642 toolshed.g2.bx.psu.edu/repos/iuc/crossmap_gff/crossmap_gff/0.3.7 | 2020-09-01 |2.0
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1643 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.3.2+galaxy1 | 2020-09-01 |2.0
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1644 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/0.2.2 | 2020-09-01 |2.0
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1645 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.2 | 2020-09-01 |2.0
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1646 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy0 | 2020-09-01 |2.0
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1647 deseq2_single | 2020-09-01 |2.0
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1648 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.1 | 2020-09-01 |2.0
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1649 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.3.2+galaxy1 | 2020-09-01 |2.0
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1650 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_lefse/mothur_make_lefse/1.39.5.0 | 2020-09-01 |2.0
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1651 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.1.1 | 2020-09-01 |2.0
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1652 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 | 2020-09-01 |2.0
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1653 toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go/group_humann2_uniref_abundances_to_go/1.2.3 | 2020-09-01 |2.0
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1654 toolshed.g2.bx.psu.edu/repos/devteam/megablast_xml_parser/megablast_xml_parser/1.0.1 | 2020-09-01 |2.0
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1655 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.39.5.0 | 2020-09-01 |2.0
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1656 toolshed.g2.bx.psu.edu/repos/bgruening/get_pubchem/ctb_pubchem_download_as_smiles/0.3 | 2020-09-01 |2.0
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1657 toolshed.g2.bx.psu.edu/repos/bgruening/nucleosome_prediction/Nucleosome/3.0 | 2020-09-01 |2.0
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1658 toolshed.g2.bx.psu.edu/repos/devteam/freebayes_wrapper/freebayes_wrapper/0.5.0 | 2020-09-01 |2.0
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1659 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.4.3+galaxy9 | 2020-09-01 |2.0
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1660 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.3.2+galaxy1 | 2020-09-01 |2.0
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1661 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.2 | 2020-09-01 |2.0
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1662 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy9 | 2020-09-01 |2.0
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1664 toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator/metagene_annotator/1.0.0 | 2020-09-01 |2.0
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1665 toolshed.g2.bx.psu.edu/repos/imgteam/count_objects/ip_count_objects/0.0.4 | 2020-09-01 |2.0
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1666 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.5+galaxy0 | 2020-09-01 |2.0
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1667 toolshed.g2.bx.psu.edu/repos/ecology/pampa_communitymetrics/pampa_communitymetrics/0.0.1 | 2020-09-01 |2.0
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1681 toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/4.2.5 | 2020-09-01 |2.0
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1688 toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_multi_to_single_fast5/ont_fast5_api_multi_to_single_fast5/3.1.3+galaxy0 | 2020-09-01 |2.0
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1690 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.3.2+galaxy0 | 2020-09-01 |2.0
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1691 toolshed.g2.bx.psu.edu/repos/iuc/mothur_seq_error/mothur_seq_error/1.39.5.0 | 2020-09-01 |2.0
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1692 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.4+galaxy1 | 2020-09-01 |2.0
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1693 toolshed.g2.bx.psu.edu/repos/iuc/heinz/heinz_visualization/0.1.1 | 2020-09-01 |2.0
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1694 toolshed.g2.bx.psu.edu/repos/iuc/moabs/moabs/1.3.4.6+galaxy1 | 2020-09-01 |2.0
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1695 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 | 2020-09-01 |2.0
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1696 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.1.6.0 | 2020-09-01 |2.0
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1697 toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5 | 2020-09-01 |2.0
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1698 eden_sequence_converter | 2020-09-01 |2.0
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1699 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_expand/metaquantome_expand/2.0.0-0 | 2020-09-01 |2.0
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1700 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_generalized_linear/sklearn_generalized_linear/1.0.8.2 | 2020-09-01 |2.0
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1701 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.4.1.0 | 2020-09-01 |2.0
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1702 toolshed.g2.bx.psu.edu/repos/bgruening/keras_model_config/keras_model_config/0.5.0 | 2020-09-01 |1.0
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1703 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg/hcluster_sg/0.5.1 | 2020-09-01 |1.0
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1704 bed_to_bigBed | 2020-09-01 |1.0
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1705 toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.1.5 | 2020-09-01 |1.0
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1706 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy9 | 2020-09-01 |1.0
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1707 toolshed.g2.bx.psu.edu/repos/galaxyp/gffcompare_to_bed/gffcompare_to_bed/0.1.0 | 2020-09-01 |1.0
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1708 toolshed.g2.bx.psu.edu/repos/bgruening/rnaz/rnaz/2.1.1 | 2020-09-01 |1.0
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1709 toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.10 | 2020-09-01 |1.0
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1710 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/freebayes-0.9.14 | 2020-09-01 |1.0
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1711 toolshed.g2.bx.psu.edu/repos/bgruening/protein_properties/bg_protein_properties/0.1.0 | 2020-09-01 |1.0
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1712 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.0.2.0 | 2020-09-01 |1.0
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1713 toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.1 | 2020-09-01 |1.0
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1714 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.9.1 | 2020-09-01 |1.0
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1715 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/2.18.2.1 | 2020-09-01 |1.0
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1716 toolshed.g2.bx.psu.edu/repos/yhoogstrate/segmentation_fold/smf_utils_find-boxes/smf-v1.7-0_utils-v2.1.1-1 | 2020-09-01 |1.0
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1717 toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.0 | 2020-09-01 |1.0
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1718 vcf_to_maf_customtrack1 | 2020-09-01 |1.0
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1719 toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_count/mothur_merge_count/1.39.5.0 | 2020-09-01 |1.0
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1720 toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_shared/mothur_filter_shared/1.39.5.0 | 2020-09-01 |1.0
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1721 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_remduplicates/openbabel_remDuplicates/3.1.1+galaxy0 | 2020-09-01 |1.0
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1722 toolshed.g2.bx.psu.edu/repos/jjohnson/cdhit/cd_hit_protein/1.2 | 2020-09-01 |1.0
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1723 __RELABEL_FROM_FILE__ | 2020-09-01 |1.0
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1724 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_extract_clusters/biomd_extract_clusters/0.1.5.2+galaxy0 | 2020-09-01 |1.0
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1725 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_tile/0.69.8+galaxy7 | 2020-09-01 |1.0
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1726 toolshed.g2.bx.psu.edu/repos/iuc/data_manager_hisat2_index_builder/hisat2_index_builder_data_manager/2.0.5 | 2020-09-01 |1.0
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1727 toolshed.g2.bx.psu.edu/repos/rnateam/antarna/antarna/1.1 | 2020-09-01 |1.0
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1728 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.5.2b-1 | 2020-09-01 |1.0
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1729 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_merge/vcftools_merge/0.1 | 2020-09-01 |1.0
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1730 toolshed.g2.bx.psu.edu/repos/iuc/humann2_barplot/humann2_barplot/0.11.1.0 | 2020-09-01 |1.0
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1731 toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.20.1 | 2020-09-01 |1.0
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1732 CONVERTER_bcf_uncompressed_to_bcf | 2020-09-01 |1.0
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1733 toolshed.g2.bx.psu.edu/repos/iuc/gemini_pathways/gemini_pathways/0.20.1 | 2020-09-01 |1.0
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1734 toolshed.g2.bx.psu.edu/repos/bgruening/enumerate_charges/enumerate_charges/2020.03.4+galaxy0 | 2020-09-01 |1.0
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1735 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_uchime/mothur_chimera_uchime/1.39.5.0 | 2020-09-01 |1.0
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1736 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.1 | 2020-09-01 |1.0
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1737 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy9 | 2020-09-01 |1.0
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1738 toolshed.g2.bx.psu.edu/repos/anton/vcfcheck/vcfcheck/0.0.1 | 2020-09-01 |1.0
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1739 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_data_preprocess/sklearn_data_preprocess/1.0.8.2 | 2020-09-01 |1.0
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1740 toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
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1741 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotsvl/hicexplorer_hicplotsvl/3.4.3.0 | 2020-09-01 |1.0
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1742 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_links/2.29.2 | 2020-09-01 |1.0
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1743 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_prosit_csv_to_library/encyclopedia_prosit_csv_to_library/0.9.5.0 | 2020-09-01 |1.0
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1744 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_masking/2.8.3.0 | 2020-09-01 |1.0
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1745 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/2.4.0.0 | 2020-09-01 |1.0
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1746 toolshed.g2.bx.psu.edu/repos/bgruening/dotknot/dotknot/1.3.1 | 2020-09-01 |1.0
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1747 toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy1 | 2020-09-01 |1.0
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1748 toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1 | 2020-09-01 |1.0
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1749 toolshed.g2.bx.psu.edu/repos/iuc/poretools_winner/poretools_winner/0.6.1a1.0 | 2020-09-01 |1.0
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1750 toolshed.g2.bx.psu.edu/repos/iuc/nanocompore_db/nanocompore_db/1.0.0rc3.post2+galaxy2 | 2020-09-01 |1.0
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1751 toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0 | 2020-09-01 |1.0
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1752 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.16.3 | 2020-09-01 |1.0
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1753 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0 | 2020-09-01 |1.0
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1755 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.5.0 | 2020-09-01 |1.0
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1756 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_histogram/ggplot2_histogram/2.2.1+galaxy0 | 2020-09-01 |1.0
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1757 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: dotpath25/5.0.0.1 | 2020-09-01 |1.0
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1761 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.2 | 2020-09-01 |1.0
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1762 toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.0.9 | 2020-09-01 |1.0
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1763 srma_wrapper | 2020-09-01 |1.0
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1764 toolshed.g2.bx.psu.edu/repos/iuc/vt_variant_tools/vt_normalize/0.1.0 | 2020-09-01 |1.0
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1765 toolshed.g2.bx.psu.edu/repos/devteam/short_reads_trim_seq/trim_reads/1.0.0 | 2020-09-01 |1.0
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1768 toolshed.g2.bx.psu.edu/repos/ethevenot/transformation/Transformation/2.2.0 | 2020-09-01 |1.0
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1770 modENCODEworm | 2020-09-01 |1.0
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1773 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/2.1.0 | 2020-09-01 |1.0
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1774 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_new_oscar/1.0.0 | 2020-09-01 |1.0
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1775 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_pca/1.0.0 | 2020-09-01 |1.0
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1776 codon_count | 2020-09-01 |1.0
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1777 toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/0.0.1 | 2020-09-01 |1.0
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1778 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_partition/monocle3_partition/0.1.4+galaxy0 | 2020-09-01 |1.0
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1779 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/0.4 | 2020-09-01 |1.0
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1780 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/4.6.3 | 2020-09-01 |1.0
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1782 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.29.0 | 2020-09-01 |1.0
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1783 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.2.3 | 2020-09-01 |1.0
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1784 toolshed.g2.bx.psu.edu/repos/devteam/tophat_fusion_post/tophat_fusion_post/0.1 | 2020-09-01 |1.0
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1785 toolshed.g2.bx.psu.edu/repos/iuc/idba_hybrid/idba_hybrid/1.1.3 | 2020-09-01 |1.0
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1786 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/0.0.4 | 2020-09-01 |1.0
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1814 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 | 2020-09-01 |1.0
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1815 interactive_tool_fairdom_send | 2020-09-01 |1.0
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1816 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/0.9 | 2020-09-01 |1.0
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1817 toolshed.g2.bx.psu.edu/repos/devteam/vcf2pgsnp/vcf2pgSnp/1.0.0 | 2020-09-01 |1.0
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1818 ucsc_table_direct_archaea1 | 2020-09-01 |1.0
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1819 toolshed.g2.bx.psu.edu/repos/lecorguille/anova/abims_anova/1.2.1 | 2020-09-01 |1.0
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1820 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.0.0 | 2020-09-01 |1.0
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1821 toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/1.0.3.1 | 2020-09-01 |1.0
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1822 toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0 | 2020-09-01 |1.0
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1823 toolshed.g2.bx.psu.edu/repos/iuc/obi_ngsfilter/obi_ngsfilter/1.2.11 | 2020-09-01 |1.0
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1824 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.5.43+galaxy1 | 2020-09-01 |1.0
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1825 toolshed.g2.bx.psu.edu/repos/iuc/idba_ud/idba_ud/1.1.3+galaxy1 | 2020-09-01 |1.0
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1826 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.2.0 | 2020-09-01 |1.0
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1827 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnalalifold/viennarna_rnalalifold/2.2.10.0 | 2020-09-01 |1.0
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1828 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.6.0+galaxy0 | 2020-09-01 |1.0
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1829 interactive_tool_openrefine | 2020-09-01 |1.0
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1830 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.3 | 2020-09-01 |1.0
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1831 toolshed.g2.bx.psu.edu/repos/iuc/picrust_compare_biom/picrust_compare_biom/1.1.1.0 | 2020-09-01 |1.0
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1832 toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.1 | 2020-09-01 |1.0
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1833 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.8 | 2020-09-01 |1.0
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1834 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_sharedseqs/mothur_get_sharedseqs/1.39.5.0 | 2020-09-01 |1.0
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1835 mosaik_wrapper | 2020-09-01 |1.0
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1836 toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/ip_scale_image/0.4 | 2020-09-01 |1.0
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1837 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotate/vcfannotate/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
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1838 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.8+galaxy1 | 2020-09-01 |1.0
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1839 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.2.0 | 2020-09-01 |1.0
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1840 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignerspectrum/MapAlignerSpectrum/2.5+galaxy0 | 2020-09-01 |1.0
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1841 toolshed.g2.bx.psu.edu/repos/iuc/scater_normalize/scater_normalize/1.12.2 | 2020-09-01 |1.0
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1842 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
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1843 PerM | 2020-09-01 |1.0
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1844 toolshed.g2.bx.psu.edu/repos/galaxyp/msi_preprocessing/mass_spectrometry_imaging_preprocessing/1.10.0.4 | 2020-09-01 |1.0
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1845 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.10 | 2020-09-01 |1.0
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1846 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5 | 2020-09-01 |1.0
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1847 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.2.0 | 2020-09-01 |1.0
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1848 toolshed.g2.bx.psu.edu/repos/iuc/resize_coordinate_window/resize_coordinate_window/1.0.2 | 2020-09-01 |1.0
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1849 toolshed.g2.bx.psu.edu/repos/devteam/fastx_renamer/cshl_fastx_renamer/0.0.14+galaxy1 | 2020-09-01 |1.0
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1850 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.3.1 | 2020-09-01 |1.0
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1851 toolshed.g2.bx.psu.edu/repos/iuc/gemini_lof_sieve/gemini_lof_sieve/0.20.1 | 2020-09-01 |1.0
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1852 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_multi_bamqc/qualimap_multi_bamqc/2.2.2c | 2020-09-01 |1.0
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1853 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
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1854 toolshed.g2.bx.psu.edu/repos/chemteam/ambertools_antechamber/ambertools_antechamber/19.11 | 2020-09-01 |1.0
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1855 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_read10x/seurat_read10x/2.3.1+galaxy1 | 2020-09-01 |1.0
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1856 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.2.0 | 2020-09-01 |1.0
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1857 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_filter_cells/seurat_filter_cells/2.3.1+galaxy1 | 2020-09-01 |1.0
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1858 toolshed.g2.bx.psu.edu/repos/iuc/count_seqs/count_seqs/1.9.1.0 | 2020-09-01 |1.0
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1870 toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.1.0 | 2020-09-01 |1.0
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1876 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 | 2020-09-01 |1.0
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1880 toolshed.g2.bx.psu.edu/repos/iuc/humann2_join_tables/humann2_join_tables/0.11.1.1 | 2020-09-01 |1.0
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1940 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaeval/viennarna_rnaeval/2.2.10.0 | 2020-09-01 |1.0
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1941 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.4.3.0 | 2020-09-01 |1.0
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1942 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: backtranseq2/6.6.0 | 2020-09-01 |1.0
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1943 toolshed.g2.bx.psu.edu/repos/rnateam/mlocarna/mlocarna/1.8.12.0 | 2020-09-01 |1.0
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1944 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/2.6.0.0 | 2020-09-01 |1.0
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1945 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.9+galaxy0 | 2020-09-01 |1.0
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1946 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_hbonds/mdanalysis_hbonds/1.0.0+galaxy0 | 2020-09-01 |1.0
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1947 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.0.4 | 2020-09-01 |1.0
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1948 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.6.0+galaxy0 | 2020-09-01 |1.0
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1949 toolshed.g2.bx.psu.edu/repos/iuc/kobas/kobas_annotate/0.4 | 2020-09-01 |1.0
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1950 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_info/0.1.8_1 | 2020-09-01 |1.0
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1951 toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.1 | 2020-09-01 |1.0
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1952 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/2.3.1+galaxy1 | 2020-09-01 |1.0
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1953 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.2.0 | 2020-09-01 |1.0
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1954 toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.3 | 2020-09-01 |1.0
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1955 toolshed.g2.bx.psu.edu/repos/iuc/humann2_unpack_pathways/humann2_unpack_pathways/0.11.1.0 | 2020-09-01 |1.0
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1956 toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2/gatk4_mutect2/4.1.4.0+galaxy0 | 2020-09-01 |1.0
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1957 svm_classifier | 2020-09-01 |1.0
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1958 toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9 | 2020-09-01 |1.0
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1959 toolshed.g2.bx.psu.edu/repos/iuc/trinity_analyze_diff_expr/trinity_analyze_diff_expr/2.8.4+galaxy1 | 2020-09-01 |1.0
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1960 fragmenter | 2020-09-01 |1.0
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1961 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.2 | 2020-09-01 |1.0
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1962 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.4 | 2020-09-01 |1.0
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1963 toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.20.1 | 2020-09-01 |1.0
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1964 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.2.0 | 2020-09-01 |1.0
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1965 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.1 | 2020-09-01 |1.0
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1966 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy1 | 2020-09-01 |1.0
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1967 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/2.5.7.0 | 2020-09-01 |1.0
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1968 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_einfo/ncbi_eutils_einfo/1.2 | 2020-09-01 |1.0
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1969 toolshed.g2.bx.psu.edu/repos/iuc/heinz/heinz_bum/1.0 | 2020-09-01 |1.0
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1970 toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc3+galaxy0 | 2020-09-01 |1.0
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1971 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/2.5.7.0 | 2020-09-01 |1.0
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1972 toolshed.g2.bx.psu.edu/repos/earlhaminst/smina/smina/1.0 | 2020-09-01 |1.0
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1973 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileconverter/FileConverter/2.1.0 | 2020-09-01 |1.0
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1974 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.2.0 | 2020-09-01 |1.0
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1975 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.1.1 | 2020-09-01 |1.0
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1976 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/0.9 | 2020-09-01 |1.0
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1977 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.2 | 2020-09-01 |1.0
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1978 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 | 2020-09-01 |1.0
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1979 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.3.1 | 2020-09-01 |1.0
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1980 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc3+galaxy0 | 2020-09-01 |1.0
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1981 qual_stats_boxplot | 2020-09-01 |1.0
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1982 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0 | 2020-09-01 |1.0
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1983 interactive_tool_askomics | 2020-09-01 |1.0
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1984 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_scale_data/seurat_scale_data/2.3.1+galaxy1 | 2020-09-01 |1.0
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1985 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_export_cellbrowser/seurat_export_cellbrowser/2.3.1+galaxy0 | 2020-09-01 |1.0
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1986 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_model_validation/sklearn_model_validation/1.0.8.2 | 2020-09-01 |1.0
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1987 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.4.3+galaxy9 | 2020-09-01 |1.0
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1988 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_slayer/mothur_chimera_slayer/1.39.5.0 | 2020-09-01 |1.0
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1989 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_ligand/prepare_ligand/1.5.7+galaxy0 | 2020-09-01 |1.0
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1990 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_train_test_split/sklearn_train_test_split/1.0.8.2 | 2020-09-01 |1.0
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1991 tombo_text_output | 2020-09-01 |1.0
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1992 hgv_linkToGProfile | 2020-09-01 |1.0
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1993 CONVERTER_wiggle_to_interval_0 | 2020-09-01 |1.0
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1994 toolshed.g2.bx.psu.edu/repos/iuc/valet/valet/1.0.0 | 2020-09-01 |1.0
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1995 toolshed.g2.bx.psu.edu/repos/nml/sistr_cmd/sistr_cmd/1.0.2 | 2020-09-01 |1.0
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1996 toolshed.g2.bx.psu.edu/repos/devteam/vcfaddinfo/vcfaddinfo/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
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1997 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.7.0 | 2020-09-01 |1.0
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1998 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.0.0 | 2020-09-01 |1.0
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1999 toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_sequences/get_sequences/0.1.2 | 2020-09-01 |1.0
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2000 toolshed.g2.bx.psu.edu/repos/bgruening/rxdock_rbcavity/rxdock_rbcavity/0.1.5 | 2020-09-01 |1.0
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