Mercurial > repos > bgruening > create_tool_recommendation_model
comparison test-data/test_tool_usage @ 6:e94dc7945639 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164
| author | bgruening |
|---|---|
| date | Sun, 16 Oct 2022 11:52:10 +0000 |
| parents | 4f7e6612906b |
| children |
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| 5:4f7e6612906b | 6:e94dc7945639 |
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| 1 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 2022-02-01 50054 | 1 tool_id | month | count |
| 2 upload1 2022-02-01 43169 | 2 -----------------------------------------------------------------------------------------------------------------------------------------------------+------------+--------|| |
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| 4 Cut1 2022-02-01 29046 | 4 __DATA_FETCH__ | 2022-09-01 |32104.0 |
| 5 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 2022-02-01 27481 | 5 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0 | 2022-09-01 |6885.0 |
| 6 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2 2022-02-01 17579 | 6 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy1 | 2022-09-01 |3042.0 |
| 7 toolshed.g2.bx.psu.edu/repos/bgruening/align_it/ctb_alignit/1.0.4+galaxy0 2022-02-01 15902 | 7 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 | 2022-09-01 |2661.0 |
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| 9 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1 2022-02-01 13513 | 9 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2 | 2022-09-01 |2077.0 |
| 10 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0 2022-02-01 13197 | 10 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1 | 2022-09-01 |1898.0 |
| 11 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.10 2022-02-01 13176 | 11 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.505+galaxy0 | 2022-09-01 |1806.0 |
| 12 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0 2022-02-01 12931 | 12 Cut1 | 2022-09-01 |1726.0 |
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| 16 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 2022-02-01 11502 | 16 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 | 2022-09-01 |1584.0 |
| 17 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0 2022-02-01 11487 | 17 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.10 | 2022-09-01 |1550.0 |
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| 19 toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19 2022-02-01 10569 | 19 Filter1 | 2022-09-01 |1463.0 |
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| 24 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 2022-02-01 9275 | 24 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2 | 2022-09-01 |1257.0 |
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| 27 toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0 2022-02-01 9038 | 27 Remove beginning1 | 2022-09-01 |1162.0 |
| 28 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.29.2 2022-02-01 9036 | 28 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.9+galaxy1 | 2022-09-01 |1141.0 |
| 29 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 2022-02-01 9001 | 29 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0 | 2022-09-01 |1137.0 |
| 30 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2 2022-02-01 7639 | 30 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.5 | 2022-09-01 |1073.0 |
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| 32 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/1.0.1 2022-02-01 7256 | 32 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0 | 2022-09-01 |1046.0 |
| 33 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_reheader/0.1.8_1 2022-02-01 7238 | 33 toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0+galaxy2 | 2022-09-01 |1043.0 |
| 34 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 2022-02-01 7178 | 34 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0 | 2022-09-01 |1033.0 |
| 35 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2 2022-02-01 6751 | 35 toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.12+galaxy1 | 2022-09-01 |1031.0 |
| 36 __FILTER_FAILED_DATASETS__ 2022-02-01 6565 | 36 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy1 | 2022-09-01 |998.0 |
| 37 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1 2022-02-01 6529 | 37 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy1 | 2022-09-01 |986.0 |
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| 39 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0 2022-02-01 6397 | 39 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0 | 2022-09-01 |932.0 |
| 40 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0 2022-02-01 4890 | 40 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 | 2022-09-01 |921.0 |
| 41 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1 2022-02-01 4702 | 41 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0 | 2022-09-01 |919.0 |
| 42 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 2022-02-01 4646 | 42 toolshed.g2.bx.psu.edu/repos/iuc/freyja_demix/freyja_demix/1.3.8+galaxy0 | 2022-09-01 |893.0 |
| 43 toolshed.g2.bx.psu.edu/repos/iuc/purge_dups/purge_dups/1.2.5+galaxy4 2022-02-01 4429 | 43 toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1 | 2022-09-01 |887.0 |
| 44 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 2022-02-01 4240 | 44 toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19 | 2022-09-01 |839.0 |
| 45 toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.8a 2022-02-01 4099 | 45 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2 | 2022-09-01 |829.0 |
| 46 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 2022-02-01 3694 | 46 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy0 | 2022-09-01 |820.0 |
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| 48 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.24+galaxy0 2022-02-01 3234 | 48 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2 | 2022-09-01 |803.0 |
| 49 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2 2022-02-01 2936 | 49 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 | 2022-09-01 |802.0 |
| 50 toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy0 2022-02-01 2814 | 50 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 | 2022-09-01 |796.0 |
| 51 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy0 2022-02-01 2759 | 51 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c+galaxy1 | 2022-09-01 |782.0 |
| 52 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy0 2022-02-01 2442 | 52 __FILTER_FAILED_DATASETS__ | 2022-09-01 |771.0 |
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| 54 CONVERTER_gz_to_uncompressed 2022-02-01 2340 | 54 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 | 2022-09-01 |750.0 |
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| 57 sort1 2022-02-01 1937 | 57 Grep1 | 2022-09-01 |693.0 |
| 58 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 2022-02-01 1837 | 58 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.6.7+galaxy0 | 2022-09-01 |687.0 |
| 59 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10 2022-02-01 1793 | 59 __SET_METADATA__ | 2022-09-01 |617.0 |
| 60 toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 2022-02-01 1782 | 60 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0 | 2022-09-01 |565.0 |
| 61 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2 2022-02-01 1769 | 61 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.1 | 2022-09-01 |562.0 |
| 62 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy1 2022-02-01 1718 | 62 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.1 | 2022-09-01 |560.0 |
| 63 toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 2022-02-01 1446 | 63 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1 | 2022-09-01 |552.0 |
| 64 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 2022-02-01 1435 | 64 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.3 | 2022-09-01 |501.0 |
| 65 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1 2022-02-01 1432 | 65 cat1 | 2022-09-01 |498.0 |
| 66 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.6.7+galaxy0 2022-02-01 1360 | 66 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 | 2022-09-01 |483.0 |
| 67 toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 2022-02-01 1291 | 67 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 | 2022-09-01 |478.0 |
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| 73 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1 2022-02-01 926 | 73 toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.36.2+galaxy1 | 2022-09-01 |363.0 |
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