upload1	2019-03-01	176
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72	2019-03-01	97
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.2.0	2019-03-01	67
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy2	2019-03-01	53
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.9.1.3	2019-03-01	51
toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.2	2019-03-01	38
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0	2019-03-01	38
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7	2019-03-01	31
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.52	2019-03-01	30
toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1	2019-03-01	28
CONVERTER_gz_to_uncompressed	2019-03-01	26
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.0.2.0	2019-03-01	25
toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.5	2019-03-01	25
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.5	2019-03-01	22
toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2	2019-03-01	21
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5	2019-03-01	19
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.3.1	2019-03-01	18
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0	2019-03-01	17
toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1	2019-03-01	17
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/3.0.2.0	2019-03-01	16
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/3.0.2.0	2019-03-01	16
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.2	2019-03-01	16
toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy4	2019-03-01	13
toolshed.g2.bx.psu.edu/repos/iuc/flash/flash/1.2.11.3	2019-03-01	13
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0	2019-03-01	13
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5	2019-03-01	12
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/3.0.2.0	2019-03-01	12
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/1.12.1.2	2019-03-01	12
cat1	2019-03-01	11
toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9	2019-03-01	11
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0	2019-03-01	10
wig_to_bigWig	2019-03-01	10
CONVERTER_interval_to_bed_0	2019-03-01	10
toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.34.0	2019-03-01	9
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.1	2019-03-01	9
toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1	2019-03-01	9
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6	2019-03-01	9
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0	2019-03-01	9
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11	2019-03-01	7
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.0.2.0	2019-03-01	7
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.1	2019-03-01	6
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.1.0	2019-03-01	6
secure_hash_message_digest	2019-03-01	6
CONVERTER_interval_to_bedstrict_0	2019-03-01	6
toolshed.g2.bx.psu.edu/repos/iuc/gtftobed12/gtftobed12/357	2019-03-01	6
CONVERTER_bedgraph_to_bigwig	2019-03-01	5
toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1	2019-03-01	5
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.0.2.0	2019-03-01	5
toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.1	2019-03-01	5
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.39.5.0	2019-03-01	5
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.1	2019-03-01	5
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.1	2019-03-01	4
wc_gnu	2019-03-01	4
__SET_METADATA__	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.2	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.4	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.1	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.1	2019-03-01	4
Filter1	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806	2019-03-01	4
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.1.2.0.0	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.2.0	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.31	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.9.1.4	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/devteam/fastq_filter/fastq_filter/1.1.1	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.4	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.3	2019-03-01	3
Grouping1	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2	2019-03-01	3
toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.26	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.1	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.1	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.2	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/tgac/miranda/miranda/3.3a	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.27.0.0	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.4.0	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.39.5.0	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1	2019-03-01	2
sklearn_ensemble	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.2	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.2	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.2	2019-03-01	2
ebi_sra_main	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0	2019-03-01	2
join1	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.3.1	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0	2019-03-01	2
sort1	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.3	2019-03-01	2
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.2+galaxy2	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.32.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.30.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2+galaxy1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.38	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_raxml/1.0.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.27.0.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.1.2.0.0	2019-03-01	1
re_he_maldi_image_registration	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/imgteam/overlay_moving_and_fixed_image/ip_viz_overlay_moving_and_fixed_image/0.0.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_ensemble/sklearn_ensemble/1.0	2019-03-01	1
CONVERTER_fastq_to_fqtoc0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.4.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1+galaxy1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/ip_scale_image/0.2	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_info/0.3.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/imgteam/landmark_registration/ip_landmark_registration/0.0.2	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1	2019-03-01	1
Grep1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_joiner/fastq_paired_end_joiner/2.0.1.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/bgruening/join_files_on_column_fuzzy/join_files_on_column_fuzzy/1.0.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/migmap/migmap/1.0.2.2	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.3.2	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0	2019-03-01	1
__TAG_FROM_FILE__	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_AddOrReplaceReadGroups/2.18.2.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/varscan_mpileup/varscan_mpileup/2.4.3.1	2019-03-01	1
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_esearch/ncbi_eutils_esearch/1.2	2019-03-01	1
upload1	2019-02-01	17338
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72	2019-02-01	5617
toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0	2019-02-01	5086
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1	2019-02-01	4696
toolshed.g2.bx.psu.edu/repos/rnateam/intarna/intarna/2.2.0	2019-02-01	4562
Paste1	2019-02-01	4331
Show beginning1	2019-02-01	4201
Cut1	2019-02-01	3502
Filter1	2019-02-01	2510
toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.5	2019-02-01	2334
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.1.0.46-0	2019-02-01	2174
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0	2019-02-01	1965
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1	2019-02-01	1871
CONVERTER_gz_to_uncompressed	2019-02-01	1815
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.9.1.3	2019-02-01	1776
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.1.0.46-0	2019-02-01	1775
toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1+galaxy1	2019-02-01	1664
toolshed.g2.bx.psu.edu/repos/devteam/vcfallelicprimitives/vcfallelicprimitives/0.0.3	2019-02-01	1495
toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1	2019-02-01	1296
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3	2019-02-01	1282
__SET_METADATA__	2019-02-01	1025
toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.13	2019-02-01	969
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.2.0	2019-02-01	931
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3+galaxy2	2019-02-01	899
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0	2019-02-01	897
toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2	2019-02-01	885
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.2	2019-02-01	848
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.0.2.0	2019-02-01	818
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.0	2019-02-01	800
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0	2019-02-01	794
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.1	2019-02-01	782
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5	2019-02-01	723
toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.1	2019-02-01	692
toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1	2019-02-01	669
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.52	2019-02-01	619
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.1	2019-02-01	591
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71	2019-02-01	560
cat1	2019-02-01	550
toolshed.g2.bx.psu.edu/repos/devteam/vcfallelicprimitives/vcfallelicprimitives/1.0.0_rc1+galaxy0	2019-02-01	505
wig_to_bigWig	2019-02-01	499
toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.3.0	2019-02-01	495
addValue	2019-02-01	492
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.1	2019-02-01	449
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.1	2019-02-01	449
toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1	2019-02-01	403
toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_joiner/fastq_paired_end_joiner/2.0.1.1	2019-02-01	400
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.5	2019-02-01	396
toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy4	2019-02-01	394
join1	2019-02-01	373
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0	2019-02-01	360
toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7	2019-02-01	359
comp1	2019-02-01	354
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0	2019-02-01	350
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_cmfinder/cmFinder/0.4	2019-02-01	350
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.4	2019-02-01	350
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmbuild/1.1.2.0	2019-02-01	350
toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_hmmbuild/0.1.0	2019-02-01	341
toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_hmmsearch/0.1.0	2019-02-01	340
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.1.2.0.0	2019-02-01	328
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7	2019-02-01	327
toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/2.0.1	2019-02-01	321
toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1+galaxy2	2019-02-01	313
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_bedgraph/2.19.0	2019-02-01	307
ebi_sra_main	2019-02-01	306
toolshed.g2.bx.psu.edu/repos/rnateam/chipseeker/chipseeker/1.16.2	2019-02-01	302
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6	2019-02-01	298
Remove beginning1	2019-02-01	286
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0	2019-02-01	284
toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2	2019-02-01	279
CONVERTER_fastq_to_fqtoc0	2019-02-01	277
Grouping1	2019-02-01	273
toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/1.3.4	2019-02-01	250
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.2.0	2019-02-01	248
CONVERTER_interval_to_bed_0	2019-02-01	238
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0	2019-02-01	237
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtobam/2.27.0.0	2019-02-01	228
CONVERTER_interval_to_bedstrict_0	2019-02-01	227
toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.4.1	2019-02-01	226
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0	2019-02-01	226
toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/2.4.2	2019-02-01	221
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1	2019-02-01	218
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.4.0	2019-02-01	215
toolshed.g2.bx.psu.edu/repos/crs4/bwa_mem/bwa_mem/0.8.0	2019-02-01	208
toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.2	2019-02-01	206
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.0.2.0	2019-02-01	192
toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.3.2	2019-02-01	191
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.2	2019-02-01	191
toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.1	2019-02-01	189
Convert characters1	2019-02-01	185
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6	2019-02-01	184
toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1	2019-02-01	182
toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.2	2019-02-01	181
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.5	2019-02-01	175
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0	2019-02-01	171
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0	2019-02-01	168
__ZIP_COLLECTION__	2019-02-01	162
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.0.2.0	2019-02-01	161
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_preprocessing/maldi_quant_preprocessing/1.18.0.2	2019-02-01	160
toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.0.0	2019-02-01	159
ucsc_table_direct1	2019-02-01	158
toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2	2019-02-01	157
toolshed.g2.bx.psu.edu/repos/devteam/bowtie_wrappers/bowtie_wrapper/1.2.0	2019-02-01	157
toolshed.g2.bx.psu.edu/repos/iuc/qiime_multiple_join_paired_ends/qiime_multiple_join_paired_ends/1.9.1.0	2019-02-01	154
toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1	2019-02-01	150
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.1.4.0	2019-02-01	150
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0	2019-02-01	147
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0	2019-02-01	147
toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/2.1.1	2019-02-01	144
toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8	2019-02-01	142
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.2	2019-02-01	141
toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardASMetrics/1.56.0	2019-02-01	138
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_fastq/mothur_make_fastq/1.36.1.0	2019-02-01	138
toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/2.1.1	2019-02-01	136
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0	2019-02-01	136
toolshed.g2.bx.psu.edu/repos/bgruening/unique/bg_uniq/0.3	2019-02-01	132
__UNZIP_COLLECTION__	2019-02-01	132
toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_qual/mothur_summary_qual/1.39.5.0	2019-02-01	132
toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_tabular/fastq_to_tabular/1.1.1	2019-02-01	131
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtofastq/2.27.0.0	2019-02-01	130
toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/0.8	2019-02-01	129
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.67	2019-02-01	128
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.3.0	2019-02-01	128
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/1.12.1.2	2019-02-01	127
toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.4	2019-02-01	126
wc_gnu	2019-02-01	124
toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.5.2b-2	2019-02-01	119
toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1	2019-02-01	116
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/2.18.2.1	2019-02-01	115
toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.2	2019-02-01	115
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1	2019-02-01	113
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.2	2019-02-01	112
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CASM/2.18.2.1	2019-02-01	111
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_multijoin_tool/1.1.1	2019-02-01	110
toolshed.g2.bx.psu.edu/repos/devteam/join/gops_join_1/1.0.0	2019-02-01	110
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.1	2019-02-01	109
toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1	2019-02-01	109
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1	2019-02-01	109
toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.5.2b-1	2019-02-01	107
toolshed.g2.bx.psu.edu/repos/devteam/fastx_trimmer/cshl_fastx_trimmer/1.0.2	2019-02-01	106
toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.2.0	2019-02-01	106
toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0	2019-02-01	106
toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1	2019-02-01	105
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/3.0.2.0	2019-02-01	104
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.2	2019-02-01	104
toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0	2019-02-01	102
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.27.0.0	2019-02-01	101
toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0	2019-02-01	101
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1+galaxy1	2019-02-01	100
toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806	2019-02-01	99
toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0	2019-02-01	99
CONVERTER_bedgraph_to_bigwig	2019-02-01	99
toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.11.2	2019-02-01	98
toolshed.g2.bx.psu.edu/repos/bgruening/interproscan5/interproscan/5.0.0	2019-02-01	97
toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/0.5.3.2	2019-02-01	97
toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3	2019-02-01	96
toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6	2019-02-01	96
CONVERTER_bam_to_coodinate_sorted_bam	2019-02-01	93
toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9	2019-02-01	93
toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/3.0.0	2019-02-01	92
toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.0	2019-02-01	92
toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1	2019-02-01	92
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.1	2019-02-01	91
toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.0	2019-02-01	90
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.3.1	2019-02-01	90
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.27.0.0	2019-02-01	89
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/2.1.4.0	2019-02-01	88
toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_closed_reference_otus/qiime_pick_closed_reference_otus/1.9.1.0	2019-02-01	86
toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0	2019-02-01	85
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_unified_genotyper/2.8.0	2019-02-01	85
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2	2019-02-01	82
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.27.1	2019-02-01	82
ChangeCase	2019-02-01	82
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.27.1	2019-02-01	82
toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0	2019-02-01	82
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.2	2019-02-01	81
toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.4	2019-02-01	81
toolshed.g2.bx.psu.edu/repos/iuc/bctools_merge_pcr_duplicates/bctools_merge_pcr_duplicates/0.2.2	2019-02-01	80
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.1	2019-02-01	80
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2	2019-02-01	79
toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.1	2019-02-01	79
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtofastq/2.27.1	2019-02-01	78
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.1.4.0	2019-02-01	77
toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1	2019-02-01	76
toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/fastq_trimmer/1.1.1	2019-02-01	76
toolshed.g2.bx.psu.edu/repos/iuc/sickle/sickle/1.33.1	2019-02-01	75
sort1	2019-02-01	74
toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.221.3	2019-02-01	72
toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.12	2019-02-01	70
toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0	2019-02-01	69
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.3.1	2019-02-01	67
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1	2019-02-01	67
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.1	2019-02-01	66
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.1	2019-02-01	66
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.4	2019-02-01	66
toolshed.g2.bx.psu.edu/repos/iuc/charts/charts/1.0.1	2019-02-01	65
toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_alignment_ends/bctools_extract_alignment_ends/0.2.2	2019-02-01	65
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/3.0.2.0	2019-02-01	64
toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc1+galaxy0	2019-02-01	64
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3	2019-02-01	63
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5	2019-02-01	63
mergeCols1	2019-02-01	62
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.0.1	2019-02-01	62
toolshed.g2.bx.psu.edu/repos/bgruening/bigwig_to_bedgraph/bigwig_to_bedgraph/0.1.0	2019-02-01	62
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/1.12.1.2	2019-02-01	61
Grep1	2019-02-01	60
toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.8.0	2019-02-01	60
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/2.1.4.0	2019-02-01	60
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0	2019-02-01	60
CONVERTER_fasta_to_fai	2019-02-01	59
toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.7.0	2019-02-01	59
toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1	2019-02-01	57
toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0	2019-02-01	57
toolshed.g2.bx.psu.edu/repos/rnateam/peakachu/peakachu/0.1.0.2	2019-02-01	57
toolshed.g2.bx.psu.edu/repos/devteam/scatterplot/scatterplot_rpy/1.0.3	2019-02-01	56
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.2	2019-02-01	56
toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.34.0	2019-02-01	56
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.1	2019-02-01	55
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2	2019-02-01	54
viz_overlay_moving_and_fixed_image	2019-02-01	54
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3	2019-02-01	53
toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.4	2019-02-01	53
toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0	2019-02-01	53
CONVERTER_bam_to_bigwig_0	2019-02-01	53
toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0	2019-02-01	52
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.0.2.29-1	2019-02-01	52
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.7.1.0	2019-02-01	52
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/1.12.1.1	2019-02-01	51
toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10	2019-02-01	50
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.3	2019-02-01	50
toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy1	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.26	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_markdupes/je_markdupes/1.2.1	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/rnateam/piranha/piranha/0.1.0	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_shufflebed/2.27.1	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.1.2.3	2019-02-01	49
toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie/0.7.12	2019-02-01	48
toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.20.0	2019-02-01	48
toolshed.g2.bx.psu.edu/repos/rnateam/segemehl/segemehl/0.2.0.3	2019-02-01	48
toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.39.5.0	2019-02-01	47
toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.24.1	2019-02-01	47
toolshed.g2.bx.psu.edu/repos/iuc/gtftobed12/gtftobed12/357	2019-02-01	47
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.1	2019-02-01	46
toolshed.g2.bx.psu.edu/repos/devteam/fastx_barcode_splitter/cshl_fastx_barcode_splitter/1.0.1	2019-02-01	45
toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.20.0	2019-02-01	45
toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.3	2019-02-01	44
Show tail1	2019-02-01	44
toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1	2019-02-01	44
CONVERTER_bed_gff_or_vcf_to_bigwig_0	2019-02-01	43
CONVERTER_fasta_to_tabular	2019-02-01	43
CONVERTER_vcf_bgzip_to_tabix_0	2019-02-01	43
CONVERTER_vcf_to_vcf_bgzip_0	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy2	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.4.0	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/0.0.3	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/devteam/sam_pileup/sam_pileup/1.1.2	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.4.0	2019-02-01	42
CONVERTER_bed_to_gff_0	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/imgteam/projective_transformation_points/ip_projective_transformation_points/0.0.2	2019-02-01	42
toolshed.g2.bx.psu.edu/repos/iuc/gemini_annotate/gemini_annotate/0.20.1+galaxy1	2019-02-01	41
toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4	2019-02-01	41
toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2	2019-02-01	41
toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0	2019-02-01	41
toolshed.g2.bx.psu.edu/repos/devteam/megablast_wrapper/megablast_wrapper/1.2.0	2019-02-01	41
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.0	2019-02-01	41
toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.38.3	2019-02-01	40
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_esearch/ncbi_eutils_esearch/1.2	2019-02-01	40
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.2	2019-02-01	40
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bigwig_summary/deeptools_multi_bigwig_summary/3.0.2.0	2019-02-01	40
toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0	2019-02-01	40
toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_deinterlacer/fastq_paired_end_deinterlacer/1.1.2	2019-02-01	39
toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.20.0.1	2019-02-01	39
toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1	2019-02-01	39
toolshed.g2.bx.psu.edu/repos/devteam/pileup_parser/pileup_parser/1.0.2	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/1.12.1.1	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/iuc/goenrichment/goenrichment/2.0.1	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy3	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex/je_demultiplex/1.2.1	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.0	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2	2019-02-01	38
toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.1.1	2019-02-01	37
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.1	2019-02-01	37
__EXPORT_HISTORY__	2019-02-01	37
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.1	2019-02-01	37
random_lines1	2019-02-01	37
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11	2019-02-01	37
toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.0	2019-02-01	36
toolshed.g2.bx.psu.edu/repos/bgruening/column_arrange_by_header/bg_column_arrange_by_header/0.2	2019-02-01	36
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.3	2019-02-01	36
toolshed.g2.bx.psu.edu/repos/galaxyp/proteomics_moff/proteomics_moff/1.2.1.1	2019-02-01	36
toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.0	2019-02-01	36
toolshed.g2.bx.psu.edu/repos/rnateam/selectsequencesfrommsa/selectsequencesfrommsa/1.0.2	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.0	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/engineson/multiqc/multiqc/1.0.0.0	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.9.1.4	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.1.1	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.13	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.7.1.2	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.2	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.10.2	2019-02-01	35
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotviewpoint/hicexplorer_hicplotviewpoint/2.1.4.0	2019-02-01	34
toolshed.g2.bx.psu.edu/repos/crs4/muscle/muscle/0.0.11	2019-02-01	34
toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.2.3	2019-02-01	34
toolshed.g2.bx.psu.edu/repos/galaxyp/msgfplus/msgfplus/0.5	2019-02-01	34
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.3.0	2019-02-01	34
toolshed.g2.bx.psu.edu/repos/devteam/fastq_filter/fastq_filter/1.1.1	2019-02-01	34
CONVERTER_gff_to_bed_0	2019-02-01	34
toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.0.6	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.0.0	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.3.0	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2+galaxy1	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1+galaxy1	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_crosslinked_nucleotides/bctools_extract_crosslinked_nucleotides/@VERSION+galaxy1	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.3.0	2019-02-01	33
toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_RPKM_count/2.4	2019-02-01	32
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/2.1.2.0	2019-02-01	32
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6	2019-02-01	32
toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.1	2019-02-01	32
CONVERTER_fasta_to_bowtie_base_index	2019-02-01	31
CONVERTER_bam_to_qname_sorted_bam	2019-02-01	31
toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2	2019-02-01	31
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2	2019-02-01	31
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.27.0.0	2019-02-01	31
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.3.0	2019-02-01	30
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.27.1	2019-02-01	30
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.4	2019-02-01	30
trimmer	2019-02-01	30
toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/diffbind/2.6.6.4	2019-02-01	30
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.1	2019-02-01	30
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.3.0	2019-02-01	30
toolshed.g2.bx.psu.edu/repos/devteam/sam2interval/sam2interval/1.0.1	2019-02-01	29
toolshed.g2.bx.psu.edu/repos/iuc/prinseq/prinseq/0.20.4	2019-02-01	28
toolshed.g2.bx.psu.edu/repos/devteam/cuffdiff/cuffdiff/2.2.1.5	2019-02-01	28
toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic/varscan_somatic/2.4.3.3	2019-02-01	28
toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.13.0	2019-02-01	28
toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.39.5.0	2019-02-01	27
toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.8.4	2019-02-01	27
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/2.18.2.1	2019-02-01	27
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bigwig_compare/deeptools_bigwig_compare/3.0.2.0	2019-02-01	27
bed2gff1	2019-02-01	27
toolshed.g2.bx.psu.edu/repos/rnateam/chipseeker/chipseeker/1.14.2	2019-02-01	26
toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.39.5.0	2019-02-01	26
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.4	2019-02-01	26
toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.1	2019-02-01	26
toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/2.0.1	2019-02-01	26
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.3.0	2019-02-01	26
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.27.1	2019-02-01	25
toolshed.g2.bx.psu.edu/repos/rnateam/rcas/rcas/1.5.4	2019-02-01	25
toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.20.0	2019-02-01	25
toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4	2019-02-01	25
toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_deduplicate/0.20.0	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.8.1.2	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.2	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.36.5	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgpeakcall/2.1.1.20160309.0	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes/qiime_extract_barcodes/1.9.1.0	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_variant_select/2.8.0	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_variant_filtration/2.8.0	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/iuc/transdecoder/transdecoder/3.0.1	2019-02-01	24
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.3.1	2019-02-01	23
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.3.0	2019-02-01	23
__MERGE_COLLECTION__	2019-02-01	23
toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.26	2019-02-01	23
CONVERTER_fasta_to_len	2019-02-01	23
toolshed.g2.bx.psu.edu/repos/devteam/macs/peakcalling_macs/1.0.1	2019-02-01	23
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.27.0.0	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy0	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/peterjc/blastxml_to_top_descr/blastxml_to_top_descr/0.1.1	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.39.5.0	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/devteam/fastx_artifacts_filter/cshl_fastx_artifacts_filter/1.0.1	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/devteam/subtract/gops_subtract_1/1.0.0	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.0.1	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.2	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.22.5	2019-02-01	22
CONVERTER_len_to_linecount	2019-02-01	22
Summary_Statistics1	2019-02-01	22
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.1.2.0.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/2.1.4.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/2.5.7.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/1.3.4	2019-02-01	21
ia_coordinates_of_roi	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.26.0.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.39.5.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_makewindowsbed/2.27.1	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/iuc/pear/iuc_pear/0.9.6.1	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.3.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_annotate/4.3+t.galaxy1	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/bgruening/join_files_on_column_fuzzy/join_files_on_column_fuzzy/1.0.1	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/2.5.7.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.1	2019-02-01	21
__SORTLIST__	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/2.5.7.0	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnafold/viennarna_rnafold/2.2.10.4	2019-02-01	21
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/2.18.2.1	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.11.1.0	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtobam/2.27.1	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/bebatut/format_metaphlan2_output/format_metaphlan2_output/0.1.0	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_depth_of_coverage/2.8.0	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/2.2.1.1	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/bgruening/column_arrange_by_header/bg_column_arrange_by_header/0.1	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/bgruening/canu/canu/1.7	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/0.0.11	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/iuc/mummer_nucmer/mummer_nucmer/4.0.0beta2	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.3.0	2019-02-01	20
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap/ggplot2_heatmap/2.2.1	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_rmdup/1.0.1	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.5	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/0.0.1	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.4	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.4	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/devteam/fasta_compute_length/fasta_compute_length/1.0.1	2019-02-01	19
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_NormalizeFasta/2.18.2.1	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.27.0.0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummer/mummer_mummer/4.0.0beta2	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_quantifier/rbc_mirdeep2_quantifier/2.0.0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.3.0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.1+galaxy0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/galaxyp/msi_preprocessing/mass_spectrometry_imaging_preprocessing/1.10.0.7	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_vsearch/mothur_chimera_vsearch/1.39.5.1	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/devteam/fastx_barcode_splitter/cshl_fastx_barcode_splitter/1.0.0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_histogram/ggplot2_histogram/2.2.1+galaxy0	2019-02-01	18
re_he_maldi_image_registration	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.8.4	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/imgteam/overlay_moving_and_fixed_image/ip_viz_overlay_moving_and_fixed_image/0.0.1	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.2	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.3.0	2019-02-01	18
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.0.2.29-3	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.3.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.10.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.5	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2+galaxy1	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_preprocessing/maldi_quant_preprocessing/1.18.0.3	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.1	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/bgruening/nucleosome_prediction/Nucleosome/3.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_filter/3.4	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.2	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.1	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.3.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.3.1	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_group/umi_tools_group/0.5.3.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.3.0	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/devteam/bamtools_split/bamSplit/2.4.0	2019-02-01	17
scale_image	2019-02-01	17
toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.31	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.3	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.12.0.0	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/gemini_inheritance/gemini_inheritance/0.20.1	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.3	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.4	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/jjohnson/samtools_filter/samtools_filter/1.1.1	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multicovtbed/2.27.1	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedpetobam/2.27.0.0	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.3.0	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.5	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.0	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_base_recalibrator/2.8.0	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedpetobam/2.27.1	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.0.2	2019-02-01	16
toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.0.0	2019-02-01	16
CONVERTER_interval_to_bed12_0	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/galaxyp/msi_qualitycontrol/mass_spectrometry_imaging_qc/1.10.0.7	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_splitter/fastq_paired_end_splitter/1.1.1	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.1	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex_illu/je_demultiplex_illu/1.2.1	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.39	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.1.1	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/devteam/cluster/gops_cluster_1/1.0.0	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/aragorn_trna/0.6	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.2	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.27.1	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.6.0	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/datamash_ops/1.0.6	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.5.0.1	2019-02-01	15
toolshed.g2.bx.psu.edu/repos/iuc/mothur_sub_sample/mothur_sub_sample/1.39.5.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.2.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/pureclip/pureclip/1.0.4	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_clusterbed/2.27.0.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.1.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0	2019-02-01	14
ip_projective_transformation_points	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.26.0+galaxy1	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/peterjc/venn_list/venn_list/0.0.11	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_hmmscan/0.1.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: cpgplot15/5.0.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_groups/mothur_count_groups/1.39.5.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/qiime_validate_mapping_file/qiime_validate_mapping_file/1.9.1.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.39.5.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/mothur_rarefaction_single/mothur_rarefaction_single/1.39.5.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.0	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.7.1.1	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/1.1.1	2019-02-01	14
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/2.2.1	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.39.5.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_single/mothur_summary_single/1.39.5.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.39.5.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_seqs/mothur_remove_seqs/1.36.1.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/gemini_stats/gemini_stats/0.20.1	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_shared/mothur_dist_shared/1.39.5.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.9.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/rnateam/atactk_trim_adapters/atactk_trim_adapters/0.1.6	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/qiime_assign_taxonomy/qiime_assign_taxonomy/1.9.1.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/flash/flash/1.2.11.3	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/Univariate/2.2.4	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.4.0d-2	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.39.5.0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/yhoogstrate/flaimapper/flaimapper/3.0.0-0	2019-02-01	13
toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/bebatut/cdhit/cd_hit_est/1.3	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/fastq_manipulation/fastq_manipulation/1.0.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/kellrott/regex_replace/regex_replace/1.0.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.2	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.1.3.4	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.1.2	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/0.9.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.6.1galaxy2	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_violin/ggplot2_violin/2.2.1+galaxy0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_bin/mothur_heatmap_bin/1.39.5.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.0.3	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtofastq/2.24.0	2019-02-01	12
dexseq_annotate	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: geecee41/5.0.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaalifold/viennarna_rnaalifold/2.2.10.0	2019-02-01	12
CONVERTER_bz2_to_uncompressed	2019-02-01	12
wiggle2simple1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_oturep/mothur_get_oturep/1.39.5.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicFixMate/1.56.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_raxml/1.0.0	2019-02-01	12
__IMPORT_HISTORY__	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.6.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/vcftools_merge/vcftools_merge/0.1.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/newick_utils/newick_display/1.6	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.0	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/devteam/vcftools_isec/vcftools_isec/0.1.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.10.1.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.20.1	2019-02-01	12
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.1.0	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/ethevenot/checkformat/checkFormat/3.0.0	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert_nix/msconvert_nix/3.0.9992.0	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.8.0	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/devteam/t_test_two_samples/t_test_two_samples/1.0.1	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.1	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/4.12.0.0	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/2.0.1	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.3.0	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/bgruening/rnaz/rnaz/2.1.1	2019-02-01	11
toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_info/0.1.8_1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/galaxyp/msi_filtering/mass_spectrometry_imaging_filtering/1.10.0.6	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/3.2	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.12.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.3.0	2019-02-01	10
Sff_extractor	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_unionbedgraph/2.27.1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/2.1.4.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.20.7.2	2019-02-01	10
CONVERTER_fasta_to_2bit	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/1.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/2.1.4.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go/group_humann2_uniref_abundances_to_go/1.2.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.38.3+galaxy1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.0.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.27.0.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/gemini_actionable_mutations/gemini_actionable_mutations/0.20.1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/peterjc/mummer/mummerplot_wrapper/0.0.7	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/rnateam/chipseeker/chipseeker/1.14.2.1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/devteam/flanking_features/flanking_features_1/4.0.1	2019-02-01	10
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.2	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/rnateam/cmv/cmv/1.0.8	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/devteam/correlation/cor2/1.0.0	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy3	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/devteam/dna_filtering/histogram_rpy/1.0.3	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/devteam/megablast_xml_parser/megablast_xml_parser/1.0.0	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_print_reads/2.8.0	2019-02-01	9
CONVERTER_gff_to_fli_0	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/devteam/cuffnorm/cuffnorm/2.2.1.2	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/iuc/trinity_abundance_estimates_to_matrix/trinity_abundance_estimates_to_matrix/2.8.4	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/rnateam/rnacode/rbc_rnacode/0.3.0	2019-02-01	9
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.0.2.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.1	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/ip_scale_image/0.2	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/ethevenot/heatmap/Heatmap/2.2.2	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_haplotype_caller/2.8.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/bgruening/circexplorer/circexplorer/1.1.9.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/2.5.7.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/column_remove_by_header/column_remove_by_header/0.0.1	2019-02-01	8
sklearn_ensemble	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/gemini_db_info/gemini_db_info/0.20.1	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/circos/circgraph/0.9-RC2	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/meme_dreme/meme_dreme/4.11.2.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/varscan_mpileup/varscan_mpileup/2.4.3.1	2019-02-01	8
CONVERTER_vcf_to_bgzip_0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_subtractbed/2.27.0.0	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.10.6	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.4	2019-02-01	8
toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.9.8+galaxy1	2019-02-01	8
CONVERTER_bed_to_fli_0	2019-02-01	7
CONVERTER_gff_to_interval_index_0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/humann2_genefamilies_genus_level/humann2_genefamilies_genus_level/0.11.1.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/4.11.2.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.3.1	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3r.1	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.19	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/bgruening/antismash/antismash/4.1	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.9.8	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/migmap/migmap/1.0.2.2	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_ensemble/sklearn_ensemble/1.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0	2019-02-01	7
CONVERTER_bed_to_bgzip_0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_realigner_target_creator/2.8.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/graphlan/graphlan/1.0.0.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/devteam/fastq_filter/fastq_filter/1.0.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/vt_variant_tools/vt_normalize/0.1.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/devteam/count_covariates/gatk_count_covariates/0.0.5	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/devteam/xy_plot/XY_Plot_1/1.0.2	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/bgruening/crispr_recognition_tool/crispr_recognition_tool/1.2.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc1+galaxy0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.5.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/iuc/graphlan_annotate/graphlan_annotate/1.0.0.0	2019-02-01	7
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_boxplot/cshl_fastq_quality_boxplot/1.0.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/rnateam/rnacode/rbc_rnacode/0.3.1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmbuild/1.1.0.2	2019-02-01	6
CONVERTER_bed_to_tabix_0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/scpipe/scpipe/1.0.0+galaxy1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_AddOrReplaceReadGroups/1.136.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_subtractbed/2.27.1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_junction_saturation/2.6.4.1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/devteam/gi2taxonomy/Fetch Taxonomic Ranks/1.1.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/bgruening/nn_classifier/nn_classifier/0.9	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_flankbed/2.27.1	2019-02-01	6
gene2exon1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_sequences/get_sequences/0.1.2	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/bonsai/sortmerna/merged_paired_reads_wrapper/1.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.19	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.39.5.0	2019-02-01	6
__FILTER_FROM_FILE__	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.0.1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/0.9	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/mothur_tree_shared/mothur_tree_shared/1.39.5.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: fuzzpro38/5.0.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/galaxyp/msi_spectra_plot/mass_spectrometry_imaging_mzplots/1.10.0.6	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebedgraph/2.19.0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3r.1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_groupbybed/2.27.1	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.0.2	2019-02-01	6
CONVERTER_vcf_to_tabix_0	2019-02-01	6
toolshed.g2.bx.psu.edu/repos/imgteam/landmark_registration/ip_landmark_registration/0.0.2	2019-02-01	6
__FLATTEN__	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.1.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/tmhmm2/0.0.14	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/0.0.9	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.27.0.1	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/spaln/spaln/2.3.2+galaxy0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/tmhmm2/0.0.16	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/kobas/kobas_annotate/0.4	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.26.0.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_indel_realigner/2.8.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0.1	2019-02-01	5
gff2bed1	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.0	2019-02-01	5
velveth	2019-02-01	5
velvetg	2019-02-01	5
hgv_david	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.3.1	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.3	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/1.3.3	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.9.7.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_annotate/3.4	2019-02-01	5
biomart	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.3.7	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/poretools_qualdist/poretools_qualdist/0.6.1a1.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/bgruening/rnaz/rnaz/2.1.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/imgteam/curl_post/curl_post/0.0.2	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/bgruening/svm_classifier/svm_classifier/0.9	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_complementbed/2.27.1	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.1+galaxy0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/jjohnson/cdhit/cd_hit_protein/1.2	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_esummary/ncbi_eutils_esummary/1.2	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/rnateam/rcas/rcas/1.1.1	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/pick_closed_reference_otus/pick_closed_reference_otus/1.9.1.0	2019-02-01	5
toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpsblast_wrapper/0.1.01	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_histogram/2.19.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgcmp/2.1.1.20160309.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_not-knowlegde-based/0.2	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/principal_component_analysis/pca1/1.0.2	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_QualityScoreDistribution/2.18.2.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/bjoern-gruening/sed_wrapper/sed_stream_editor/0.0.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/ethevenot/biosigner/biosigner/2.2.7	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_shufflebed/2.27.0.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.3	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.0.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: etandem33/5.0.0.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/fcaramia/varscan/varscan_mpileup/2.3.5	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/0.0.6	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.1.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/enasearch_retrieve_data/enasearch_retrieve_data/0.1.1.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.4.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/galaxyp/mass_spectrometry_imaging_segmentations/mass_spectrometry_imaging_segmentations/1.10.0.4	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/tgac/miranda/miranda/3.3a	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.39.5.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MeanQualityByCycle/2.18.2.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0	2019-02-01	4
r_correlation_matrix	2019-02-01	4
deeptools_bigwigCorrelate	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/4.6.3	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/poretools_extract/poretools_extract/0.6.1a1.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.46.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0	2019-02-01	4
cshl_find_and_replace	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/3.0.2.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.39.5.0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.3	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/bgruening/minced/minced/0.1.5	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.01	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/iuc/column_order_header_sort/column_order_header_sort/0.0.1	2019-02-01	4
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.18.1.0	2019-02-01	3
genomespace_exporter	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefinderisotopewavelet/FeatureFinderIsotopeWavelet/2.3.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/mummer_dnadiff/mummer_dnadiff/4.0.0beta2	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_alignmentsieve/deeptools_alignmentsieve/3.0.2.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_unionbedgraph/2.27.0.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_consensusid/ConsensusID/2.3.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.0.1.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_regression_performance_plots/plotly_regression_performance_plots/0.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/raceid_clustering/raceid_clustering/3.0.2.1	2019-02-01	3
svm_classifier	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/crosscontamination_barcode_filter/crosscontamination_barcode_filter/0.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/rnateam/rnalien/RNAlien/1.3.6	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_AddOrReplaceReadGroups/2.18.2.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/enasearch_search_data/enasearch_search_data/0.1.1.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.3.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/357	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/rnaz_annotate/rnaz_annotate/2.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.4.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sra_pileup/2.9.1.2	2019-02-01	3
CONVERTER_ref_to_seq_taxomony	2019-02-01	3
bwtool-lift	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/poretools_nucdist/poretools_nucdist/0.6.1a1.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.2.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaplot/viennarna_rnaplot/2.2.10.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/ethevenot/transformation/Transformation/2.2.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_clusterbed/2.27.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_egquery/ncbi_eutils_egquery/1.2	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.1.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastx_wrapper/0.3.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/galaxyp/decoyfasta/decoyfasta/0.2.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.8.1.3	2019-02-01	3
CONVERTER_wig_to_bigwig	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/2.1.4.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_barcodes/bctools_extract_barcodes/0.2.2	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0beta2	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.0.8	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.20.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.3.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/2.0.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_rows/1.1.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_pe_fragmentsize/deeptools_bam_pe_fragmentsize/3.0.2.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/2.0.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc1+galaxy0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/rnateam/peakachu/peakachu/0.1.0.1	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/1.136.0	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/iuc/trinity_analyze_diff_expr/trinity_analyze_diff_expr/2.8.4	2019-02-01	3
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.2.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_overlapbed/2.27.0.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_boxplot/cshl_fastq_quality_boxplot/1.0.1	2019-02-01	2
__BUILD_LIST__	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_rep_set/qiime_pick_rep_set/1.9.1.0	2019-02-01	2
ucsc_table_direct_archaea1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_otus/qiime_pick_otus/1.9.1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_open_reference_otus/qiime_pick_open_reference_otus/1.9.1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/yhoogstrate/ega_download_streamer/ega_download_streamer/2.1.6.g0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.0.1.0	2019-02-01	2
CONVERTER_Bam_Bai_0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/describe_samples/describe_samples/2.8.4	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.38	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.64	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/poretools_stats/poretools_stats/0.6.1a1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/2.3.4	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/poretools_squiggle/poretools_squiggle/0.6.1a1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/rnateam/rnashapes/RNAshapes/3.3.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/poretools_hist/poretools_hist/0.6.1a1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/featurecounter/featureCoverage1/2.0.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/poretools_events/poretools_events/0.6.1a1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/earlhaminst/treebest_best/treebest_best_wrapper/1.9.2	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/rnateam/mlocarna/mlocarna/1.8.12.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/0.4.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/lfq_protein_quant/lfq_protein_quant/1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/dgidb_annotator/dgidb_annotator/0.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_flankbed/2.27.0.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/anton/vcfvcfintersect/vcfvcfintersect/0.0.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/0.0.5	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.8.24.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/msaboot/msaboot/0.1.2	2019-02-01	2
CONVERTER_interval_to_bgzip_0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtoigv/2.27.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_get_chr_names/4.3+T.galaxy1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_knowlegde-based/0.2	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/gemini_burden/gemini_burden/0.20.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/gemini_comp_hets/gemini_comp_hets/0.18.1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/graphmap_align/graphmap_align/0.5.2	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/gemini_de_novo/gemini_de_novo/0.18.1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/mothur_taxonomy_to_krona/mothur_taxonomy_to_krona/1.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.11	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/vcfselectsamples/vcfselectsamples/1.0.0_rc1+galaxy0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/vcfleftalign/vcfleftalign/1.0.0_rc1+galaxy0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.12	2019-02-01	2
CONVERTER_sam_to_unsorted_bam	2019-02-01	2
bed_to_bigBed	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.3.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/promoter2/0.0.12	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_mapping/seq_filter_by_mapping/0.0.6	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/vcfgeno2haplo/vcfgeno2haplo/1.0.0_rc1+galaxy0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.18.1.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/peterjc/seq_composition/seq_composition/0.0.5	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/gemini_lof_sieve/gemini_lof_sieve/0.20.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.1.2.0	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/iuc/gemini_recessive_and_dominant/gemini_recessive_and_dominant/0.18.1.0	2019-02-01	2
Count1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.2.0.1	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2	2019-02-01	2
toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/0.0.3	2019-02-01	2