Mercurial > repos > bgruening > create_tool_recommendation_model
view test-data/test_tool_usage @ 4:afec8c595124 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 65d36f271296a38deeceb0d0e8d471b2898ee8f4"
author | bgruening |
---|---|
date | Tue, 07 Jul 2020 03:25:49 -0400 |
parents | 5b3c08710e47 |
children | 4f7e6612906b |
line wrap: on
line source
toolshed.g2.bx.psu.edu/repos/bgruening/rdock_rbdock/rdock_rbdock/0.1.1 2020-04-01 34568 upload1 2020-04-01 18321 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 2020-04-01 2839 toolshed.g2.bx.psu.edu/repos/bgruening/xchem_transfs_scoring/xchem_transfs_scoring/0.2.0 2020-04-01 1220 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0 2020-04-01 958 CONVERTER_gz_to_uncompressed 2020-04-01 919 Filter1 2020-04-01 800 Cut1 2020-04-01 787 __SET_METADATA__ 2020-04-01 685 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.5 2020-04-01 643 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy1 2020-04-01 627 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.2b 2020-04-01 605 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1 2020-04-01 538 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.3.2.0.1 2020-04-01 530 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.2.0.0 2020-04-01 475 Remove beginning1 2020-04-01 447 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 2020-04-01 408 join1 2020-04-01 369 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy5 2020-04-01 357 Convert characters1 2020-04-01 351 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.3 2020-04-01 336 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5 2020-04-01 316 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.29.0 2020-04-01 313 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.9+galaxy1 2020-04-01 311 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1 2020-04-01 305 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.3.2.0.0 2020-04-01 302 cat1 2020-04-01 299 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.6 2020-04-01 298 addValue 2020-04-01 294 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 2020-04-01 276 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 2020-04-01 275 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2 2020-04-01 274 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7.1 2020-04-01 274 ebi_sra_main 2020-04-01 272 Grouping1 2020-04-01 237 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 2020-04-01 236 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1 2020-04-01 233 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.5 2020-04-01 220 toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.1 2020-04-01 219 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.4+galaxy1 2020-04-01 218 toolshed.g2.bx.psu.edu/repos/bgruening/sucos_max_score/sucos_max_score/0.2.1 2020-04-01 216 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 2020-04-01 216 toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/3.0.0 2020-04-01 209 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5 2020-04-01 204 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/4.5.0 2020-04-01 187 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_joiner/fastq_paired_end_joiner/2.0.1.1+galaxy0 2020-04-01 185 CONVERTER_interval_to_bed_0 2020-04-01 182 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_distribution/2.6.4.1 2020-04-01 178 ucsc_table_direct1 2020-04-01 177 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6+galaxy1 2020-04-01 176 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_deinterlacer/fastq_paired_end_deinterlacer/1.1.5 2020-04-01 175 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.1 2020-04-01 172 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.4 2020-04-01 169 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.5 2020-04-01 167 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.5.1 2020-04-01 159 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.1 2020-04-01 156 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.3.0 2020-04-01 150 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.4 2020-04-01 147 toolshed.g2.bx.psu.edu/repos/devteam/join/gops_join_1/1.0.0 2020-04-01 143 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.3.2.0.0 2020-04-01 143 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.4.0 2020-04-01 143 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9 2020-04-01 142 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2 2020-04-01 139 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.3 2020-04-01 136 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.4+galaxy1 2020-04-01 134 wig_to_bigWig 2020-04-01 121 trimmer 2020-04-01 121 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.0 2020-04-01 120 CONVERTER_fastq_to_fqtoc0 2020-04-01 117 CONVERTER_bz2_to_uncompressed 2020-04-01 115 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.1 2020-04-01 112 toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/5.0.5.0 2020-04-01 110 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.3.3 2020-04-01 110 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.0 2020-04-01 107 toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.4.1 2020-04-01 105 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2 2020-04-01 105 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 2020-04-01 103 comp1 2020-04-01 102 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.2.0 2020-04-01 101 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.2.0 2020-04-01 98 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.3 2020-04-01 98 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.0.1 2020-04-01 96 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_geneBody_coverage/2.6.4.3 2020-04-01 94 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1 2020-04-01 93 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 2020-04-01 92 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 2020-04-01 92 toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8+galaxy1 2020-04-01 86 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0 2020-04-01 86 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0 2020-04-01 84 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex/je_demultiplex/1.2.1 2020-04-01 82 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/2.0.1 2020-04-01 82 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 2020-04-01 81 toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.2 2020-04-01 79 toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.2.0 2020-04-01 76 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy1 2020-04-01 74 toolshed.g2.bx.psu.edu/repos/iuc/gtftobed12/gtftobed12/357 2020-04-01 74 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.2 2020-04-01 72 __IMPORT_HISTORY__ 2020-04-01 70 toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.14.1.2 2020-04-01 70 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.3.1+galaxy1 2020-04-01 68 toolshed.g2.bx.psu.edu/repos/bgruening/interproscan5/interproscan/5.0.0 2020-04-01 67 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.3.2.0.0 2020-04-01 67 toolshed.g2.bx.psu.edu/repos/devteam/coverage/gops_coverage_1/1.0.0 2020-04-01 67 toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 2020-04-01 67 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.8+galaxy0 2020-04-01 67 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 2020-04-01 66 toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.0.4 2020-04-01 66 toolshed.g2.bx.psu.edu/repos/bgruening/bigwig_to_bedgraph/bigwig_to_bedgraph/0.1.0 2020-04-01 65 sort1 2020-04-01 65 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1 2020-04-01 65 OpenSwathWorkflow 2020-04-01 65 toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/3.2.1 2020-04-01 64 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgpeakcall/2.1.1.20160309.0 2020-04-01 63 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_multijoin_tool/1.1.1 2020-04-01 62 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.3.1 2020-04-01 62 toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3+galaxy2 2020-04-01 61 toolshed.g2.bx.psu.edu/repos/bgruening/unique/bg_uniq/0.3 2020-04-01 60 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/0.9.2 2020-04-01 59 toolshed.g2.bx.psu.edu/repos/devteam/fastx_trimmer/cshl_fastx_trimmer/1.0.2+galaxy0 2020-04-01 59 csv_to_tabular 2020-04-01 58 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.29.0 2020-04-01 57 toolshed.g2.bx.psu.edu/repos/iuc/pathview/pathview/1.24.0+galaxy0 2020-04-01 57 toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.24.1+galaxy1 2020-04-01 57 toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.2+galaxy0 2020-04-01 56 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 2020-04-01 54 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.3 2020-04-01 51 toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.1 2020-04-01 49 toolshed.g2.bx.psu.edu/repos/ecology/stoc_trend_indic/stoceps_trend_indic/0.0.1 2020-04-01 48 toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.0.5.0 2020-04-01 48 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy4 2020-04-01 47 Grep1 2020-04-01 47 toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/2.1.1 2020-04-01 47 toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3 2020-04-01 46 toolshed.g2.bx.psu.edu/repos/rnateam/chipseeker/chipseeker/1.18.0+galaxy1 2020-04-01 46 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_alignmentsieve/deeptools_alignmentsieve/3.0.2.0 2020-04-01 46 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy0 2020-04-01 45 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.3 2020-04-01 44 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.3 2020-04-01 44 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 2020-04-01 43 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.1 2020-04-01 43 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/2.4.2.1.0 2020-04-01 43 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.3.2.0.0 2020-04-01 43 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.36.0+galaxy0 2020-04-01 43 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.7.12 2020-04-01 42 __EXPORT_HISTORY__ 2020-04-01 42 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.39.5.0 2020-04-01 42 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 2020-04-01 42 toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.0 2020-04-01 41 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3 2020-04-01 41 toolshed.g2.bx.psu.edu/repos/devteam/fastq_filter/fastq_filter/1.1.5 2020-04-01 41 toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 2020-04-01 41 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.1 2020-04-01 40 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_generalized_linear/sklearn_generalized_linear/1.0.8.2 2020-04-01 40 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_clf_metrics/sklearn_clf_metrics/1.0.8.1 2020-04-01 40 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.2 2020-04-01 40 toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.11.2 2020-04-01 40 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_clf_metrics/sklearn_clf_metrics/1.0.8.2 2020-04-01 40 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.9.1 2020-04-01 39 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 2020-04-01 38 toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1 2020-04-01 38 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_bedgraph/2.19.0 2020-04-01 37 toolshed.g2.bx.psu.edu/repos/bgruening/sdf_to_tab/sdf_to_tab/2019.03.1 2020-04-01 37 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.4 2020-04-01 37 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 2020-04-01 37 toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0 2020-04-01 37 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.1 2020-04-01 36 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sra_pileup/2.10.3 2020-04-01 36 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.2 2020-04-01 36 toolshed.g2.bx.psu.edu/repos/iuc/samtools_merge/samtools_merge/1.9 2020-04-01 36 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.0 2020-04-01 35 toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.6 2020-04-01 35 toolshed.g2.bx.psu.edu/repos/devteam/bowtie_wrappers/bowtie_wrapper/1.2.0 2020-04-01 34 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.4.3.0 2020-04-01 34 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bigwig_compare/deeptools_bigwig_compare/3.3.2.0.0 2020-04-01 34 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.10.4+galaxy1 2020-04-01 34 CONVERTER_bam_to_bigwig_0 2020-04-01 34 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc3+galaxy0 2020-04-01 34 toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_score/pyprophet_score/2.1.4.0 2020-04-01 34 toolshed.g2.bx.psu.edu/repos/ecology/vigiechiro_bilanenrichipf/vigiechiro_bilanenrichipf/0.1.1 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/ecology/vigiechiro_idcorrect_2ndlayer/vigiechiro_idcorrect_2ndlayer/0.1.1 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_generalized_linear/sklearn_generalized_linear/1.0.8.1 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/ecology/vigiechiro_idvalid/vigiechiro_idvalid/0.1.1 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/bgruening/canu/canu/1.8 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.0 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim/gmx_sim/2019.1.1 2020-04-01 33 toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/diffbind/2.10.0 2020-04-01 32 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/2.1.1 2020-04-01 32 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.4 2020-04-01 32 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy0 2020-04-01 32 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/2.4.0.0 2020-04-01 32 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy2 2020-04-01 32 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/3.3.2.0.0 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy3 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.10 2020-04-01 31 CONVERTER_bam_to_qname_sorted_bam 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.4.4.post1+galaxy2 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.38.3+galaxy3 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/1.3.6 2020-04-01 31 toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.2 2020-04-01 30 toolshed.g2.bx.psu.edu/repos/bgruening/rdock_sort_filter/rdock_sort_filter/0.1.0 2020-04-01 30 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.1 2020-04-01 30 toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 2020-04-01 30 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy1 2020-04-01 30 toolshed.g2.bx.psu.edu/repos/peterjc/venn_list/venn_list/0.1.1 2020-04-01 30 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix_operations/deeptools_compute_matrix_operations/3.3.2.0.0 2020-04-01 29 toolshed.g2.bx.psu.edu/repos/iuc/mothur_sub_sample/mothur_sub_sample/1.39.5.0 2020-04-01 29 toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_single/mothur_summary_single/1.39.5.0 2020-04-01 29 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.13.0 2020-04-01 29 toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.2b1 2020-04-01 29 toolshed.g2.bx.psu.edu/repos/iuc/mothur_taxonomy_to_krona/mothur_taxonomy_to_krona/1.0 2020-04-01 28 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/3.3.2.0.0 2020-04-01 28 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.5 2020-04-01 28 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.2 2020-04-01 28 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.4.3.0 2020-04-01 28 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.29.0 2020-04-01 27 toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.1.1 2020-04-01 27 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c+galaxy1 2020-04-01 27 toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.3 2020-04-01 27 toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.7.0+galaxy1 2020-04-01 27 Show beginning1 2020-04-01 27 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.1 2020-04-01 27 toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1 2020-04-01 26 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_sample_generator/sklearn_sample_generator/1.0.8.1 2020-04-01 26 tabular_to_csv 2020-04-01 26 toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc3+galaxy3 2020-04-01 26 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.1 2020-04-01 26 toolshed.g2.bx.psu.edu/repos/devteam/correlation/cor2/1.0.0 2020-04-01 26 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_sample_generator/sklearn_sample_generator/1.0.8.2 2020-04-01 26 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.2 2020-04-01 26 CONVERTER_interval_to_bedstrict_0 2020-04-01 25 toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2 2020-04-01 25 toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1+galaxy2 2020-04-01 25 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_ensemble/sklearn_ensemble/1.0.8.2 2020-04-01 25 toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 2020-04-01 25 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.5+galaxy0 2020-04-01 24 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-2 2020-04-01 24 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_ensemble/sklearn_ensemble/1.0.8.1 2020-04-01 24 toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.8.4 2020-04-01 24 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund_to_tabular/cummerbund_to_cuffdiff/1.0.1 2020-04-01 23 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_subtractbed/2.29.0 2020-04-01 23 CONVERTER_interval_to_bed12_0 2020-04-01 23 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc1+galaxy0 2020-04-01 23 toolshed.g2.bx.psu.edu/repos/bgruening/join_files_on_column_fuzzy/join_files_on_column_fuzzy/1.0.1 2020-04-01 22 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0 2020-04-01 22 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4 2020-04-01 22 toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3 2020-04-01 22 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_raxml/1.0.0 2020-04-01 21 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 2020-04-01 21 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0 2020-04-01 21 toolshed.g2.bx.psu.edu/repos/ecology/stoc_mainglm/stoceps_glm/0.0.1 2020-04-01 21 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.20+galaxy0 2020-04-01 21 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/0.9.8 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/0.2 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4+galaxy0 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.39.5.0 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.39.5.0 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.2 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/species_tree_generator/3.0.0b35 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0 2020-04-01 20 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim/gmx_sim/2019.1.4.1 2020-04-01 19 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.29.0 2020-04-01 19 Paste1 2020-04-01 19 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2 2020-04-01 19 toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.9.0 2020-04-01 19 toolshed.g2.bx.psu.edu/repos/computationaltranscriptomics/glassgo/glassgo/1.5.2 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/jcvi_gff_stats/jcvi_gff_stats/0.8.4 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_data_preprocess/sklearn_data_preprocess/1.0.8.1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes/1.0.8.2 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.39.5.0 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_data_preprocess/sklearn_data_preprocess/1.0.8.2 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_estimator_attributes/sklearn_estimator_attributes/1.0.8.1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/mageck_test/mageck_test/0.5.8.1 2020-04-01 18 CONVERTER_fasta_to_tabular 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_markdupes/je_markdupes/1.2.1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.3.3 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_populations/stacks2_populations/2.4+galaxy1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 2020-04-01 18 ChangeCase 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/2.0.1 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5+galaxy2 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.11.1.0 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.52 2020-04-01 18 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.29.0 2020-04-01 17 CONVERTER_ref_to_seq_taxomony 2020-04-01 17 toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_rmdup/1.0.1 2020-04-01 17 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.39.5.0 2020-04-01 17 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy2 2020-04-01 17 toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.14+galaxy2.9.1 2020-04-01 17 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/0.0.3 2020-04-01 17 CONVERTER_bam_to_coodinate_sorted_bam 2020-04-01 17 toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/1.5.5.3 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy3 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/devteam/fastq_manipulation/fastq_manipulation/1.1.5 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/mothur_lefse/mothur_lefse/1.39.5.0 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.14.1 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_inspect/scanpy_inspect/1.4.4.post1+galaxy2 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_score/pyprophet_score/2.1.4.1 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/bgruening/augustus_training/augustus_training/3.3.3 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy1 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/earlhaminst/replace_chromosome_names/replace_chromosome_names/0.1 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/bgruening/ml_visualization_ex/ml_visualization_ex/1.0.8.2 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/1.0.0_rc3+galaxy0 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/0.11.5 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/bgruening/numeric_clustering/numeric_clustering/0.9 2020-04-01 16 toolshed.g2.bx.psu.edu/repos/iuc/graphlan/graphlan/1.0.0.0 2020-04-01 15 toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_phylogeny/qiime_make_phylogeny/1.9.1.0 2020-04-01 15 toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2+galaxy1 2020-04-01 15 toolshed.g2.bx.psu.edu/repos/iuc/snp_sites/snp_sites/2.5.1+galaxy0 2020-04-01 15 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.221.3 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/ecology/stoc_filteringsp/stoceps_filteringsp/0.0.1 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/bgruening/antismash/antismash/4.1 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/mothur_rarefaction_single/mothur_rarefaction_single/1.39.5.0 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/trinity_abundance_estimates_to_matrix/trinity_abundance_estimates_to_matrix/2.9.1 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.2 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/graphlan_annotate/graphlan_annotate/1.0.0.0 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.28.2+galaxy1 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/trinity_abundance_estimates_to_matrix/trinity_abundance_estimates_to_matrix/2.8.4 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.4 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.1 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.22.1+galaxy2 2020-04-01 14 __UNZIP_COLLECTION__ 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.39.5.0 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic/varscan_somatic/2.4.3.6 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/devteam/vcfaddinfo/vcfaddinfo/1.0.0_rc3+galaxy0 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicconvertformat/hicexplorer_hicconvertformat/3.4.3.0 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6 2020-04-01 14 toolshed.g2.bx.psu.edu/repos/ecology/stoc_mainglm_group/stoceps_glm_group/0.0.1 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.39.5.0 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_em/gmx_em/2019.1.1 2020-04-01 13 CONVERTER_wig_to_bigwig 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/rnateam/peakachu/peakachu/0.1.0.2 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.4.0.0 2020-04-01 13 interactive_tool_rstudio 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.1 2020-04-01 13 param_value_from_file 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/ecology/stoc_maketable/stoceps_maketablecarrer/0.0.1 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0 2020-04-01 13 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.3 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.16.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation/nanopolish_methylation/0.11.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic/varscan_somatic/2.4.3.3 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.39.5.0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.9.21.0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0.8.2 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/devteam/vcfhethom/vcfhethom/1.0.0_rc3+galaxy0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0.8.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_nvt/gmx_nvt/2019.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.1.3.4 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/5.0.0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/earlhaminst/gstf_preparation/gstf_preparation/0.4.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10+galaxy1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.4.4.post1+galaxy2 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_discriminant_classifier/sklearn_discriminant_classifier/1.0.8.2 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_discriminant_classifier/sklearn_discriminant_classifier/1.0.8.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.5 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10+galaxy1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.22.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.39.5.0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_base_recalibrator/0.0.7 2020-04-01 12 CONVERTER_gff_to_bed_0 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/devteam/fastx_barcode_splitter/cshl_fastx_barcode_splitter/1.0.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/eschen42/w4mclassfilter/w4mclassfilter/0.98.18 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.11.2 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_regression_metrics/sklearn_regression_metrics/1.0.8.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_regression_metrics/sklearn_regression_metrics/1.0.8.2 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/ml_visualization_ex/ml_visualization_ex/1.0.8.1 2020-04-01 12 toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.6 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_tabular/fastq_to_tabular/1.1.5 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca_visualize/bio3d_pca_visualize/2.3.4 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/charts/charts/1.0.1 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.10.0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.1.0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2+galaxy0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.4.4.post1+galaxy2 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1+galaxy0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.2 2020-04-01 11 gff2bed1 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_seqs/mothur_remove_seqs/1.39.5.0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/stacks_refmap/stacks_refmap/1.46.0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/newick_utils/newick_display/1.6+galaxy1 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_setup/gmx_setup/2019.1.1 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.0.1+galaxy0 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.3 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_solvate/gmx_solvate/2019.1.1 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/gemini_db_info/gemini_db_info/0.20.1 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.9 2020-04-01 11 toolshed.g2.bx.psu.edu/repos/iuc/qiime_assign_taxonomy/qiime_assign_taxonomy/1.9.1.0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_model_validation/sklearn_model_validation/1.0.8.2 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.19 2020-04-01 10 Count1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_model_validation/sklearn_model_validation/1.0.8.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_train_test_split/sklearn_train_test_split/1.0.8.2 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_alignmentsieve/deeptools_alignmentsieve/3.3.2.0.0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpsift_vartype/4.3.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/1.12.1.3 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_vsearch/mothur_chimera_vsearch/1.39.5.1 2020-04-01 10 interactive_tool_jupyter_notebook 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/create_tool_recommendation_model/create_tool_recommendation_model/0.0.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/galaxyp/quantp/quantp/1.1.2 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.8.4 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/2.1.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.10 2020-04-01 10 __MERGE_COLLECTION__ 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.8.4 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.0.0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/column_arrange_by_header/bg_column_arrange_by_header/0.2 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0 2020-04-01 10 CONVERTER_bedgraph_to_bigwig 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/progressivemauve/progressivemauve/2015_02_13.0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.9.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/goenrichment/goenrichment/2.0.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.0.1+galaxy0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/salmonquantmerge/salmonquantmerge/0.14.1.2 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_train_test_split/sklearn_train_test_split/1.0.8.1 2020-04-01 10 CONVERTER_bed_to_gff_0 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/devteam/flanking_features/flanking_features_1/4.0.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.1 2020-04-01 10 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_counts/qualimap_counts/2.2.2c 2020-04-01 10 __ZIP_COLLECTION__ 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/snap_training/snap_training/2013_11_29+galaxy1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/iedb_api/iedb_api/2.15.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/bgruening/chemfp/ctb_chemfp_mol2fps/1.5 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/1.12.1.3 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/gemini_inheritance/gemini_inheritance/0.20.1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.5.3 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 2020-04-01 9 CONVERTER_fasta_to_fai 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bigwig_summary/deeptools_multi_bigwig_summary/3.3.2.0.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/sina/sina/1.5.0+galaxy1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/trnascan/0.4 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0+galaxy2 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/humann2_unpack_pathways/humann2_unpack_pathways/0.11.1.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.28.1.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.3.3 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_setup/gmx_setup/2019.1.4 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.1.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_solvate/gmx_solvate/2019.1.4 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/yhoogstrate/flaimapper/flaimapper/3.0.0-0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/nick/allele_counts/allele_counts_1/1.2 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.10.1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_samples_from_otu_table/qiime_filter_samples_from_otu_table/1.9.1.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_fasta/qiime_filter_fasta/1.9.1.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/scpipe/scpipe/1.0.0+galaxy1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.9.1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/devteam/macs/peakcalling_macs/1.0.1 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_otus/qiime_pick_otus/1.9.1.0 2020-04-01 9 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.3.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_em/gmx_em/2019.1.4 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go/group_humann2_uniref_abundances_to_go/1.2.3 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/galaxyp/idpquery/idpquery/3.0.11579.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.1.5 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/iuc/bp_genbank2gff3/bp_genbank2gff3/1.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/bgruening/keras_model_builder/keras_model_builder/0.4.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/iuc/sickle/sickle/1.33.2 2020-04-01 8 liftOver1 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/0.5.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc3+galaxy0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.1 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.11 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.1.0.46-0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_info/0.1.8_1 2020-04-01 8 CONVERTER_vcf_bgzip_to_tabix_0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.3.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete3_mod/3.1.1 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.3.1+galaxy0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/sam2interval/sam2interval/1.0.2 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.14.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/1.3 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.46.0 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy3 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.11.1 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/rnateam/graphprot_predict_profile/graphprot_predict_profile/1.1.7 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.3.3 2020-04-01 8 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_boxplot/cshl_fastq_quality_boxplot/1.0.1 2020-04-01 8