Mercurial > repos > bgruening > create_tool_recommendation_model
view transformer_network.py @ 6:e94dc7945639 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164
author | bgruening |
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date | Sun, 16 Oct 2022 11:52:10 +0000 |
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import tensorflow as tf from tensorflow.keras.layers import (Dense, Dropout, Embedding, Layer, LayerNormalization, MultiHeadAttention) from tensorflow.keras.models import Sequential class TransformerBlock(Layer): def __init__(self, embed_dim, num_heads, ff_dim, rate=0.1): super(TransformerBlock, self).__init__() self.att = MultiHeadAttention(num_heads=num_heads, key_dim=embed_dim, dropout=rate) self.ffn = Sequential( [Dense(ff_dim, activation="relu"), Dense(embed_dim)] ) self.layernorm1 = LayerNormalization(epsilon=1e-6) self.layernorm2 = LayerNormalization(epsilon=1e-6) self.dropout1 = Dropout(rate) self.dropout2 = Dropout(rate) def call(self, inputs, training): attn_output, attention_scores = self.att(inputs, inputs, inputs, return_attention_scores=True, training=training) attn_output = self.dropout1(attn_output, training=training) out1 = self.layernorm1(inputs + attn_output) ffn_output = self.ffn(out1) ffn_output = self.dropout2(ffn_output, training=training) return self.layernorm2(out1 + ffn_output), attention_scores class TokenAndPositionEmbedding(Layer): def __init__(self, maxlen, vocab_size, embed_dim): super(TokenAndPositionEmbedding, self).__init__() self.token_emb = Embedding(input_dim=vocab_size, output_dim=embed_dim, mask_zero=True) self.pos_emb = Embedding(input_dim=maxlen, output_dim=embed_dim, mask_zero=True) def call(self, x): maxlen = tf.shape(x)[-1] positions = tf.range(start=0, limit=maxlen, delta=1) positions = self.pos_emb(positions) x = self.token_emb(x) return x + positions