# HG changeset patch
# User bgruening
# Date 1665921130 0
# Node ID e94dc7945639922a08d1a670e5ceaea44d984d53
# Parent  4f7e6612906b33faf9d8d448b8cd4168f7d105b9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164

diff -r 4f7e6612906b -r e94dc7945639 create_tool_recommendation_model.xml
--- a/create_tool_recommendation_model.xml	Fri May 06 09:05:18 2022 +0000
+++ b/create_tool_recommendation_model.xml	Sun Oct 16 11:52:10 2022 +0000
@@ -1,32 +1,32 @@
-<tool id="create_tool_recommendation_model" name="Create a model to recommend tools" version="0.0.4">
+<tool id="create_tool_recommendation_model" name="Create a model to recommend tools" version="0.0.5">
     <description>using deep learning</description>
     <requirements>
-        <requirement type="package" version="3.9.7">python</requirement>
-        <requirement type="package" version="2.7.0">tensorflow</requirement>
-        <requirement type="package" version="2.7.0">keras</requirement>
+        <requirement type="package" version="3.9.12">python</requirement>
+        <requirement type="package" version="2.9.1">tensorflow</requirement>
+        <requirement type="package" version="2.9.0">keras</requirement>
         <requirement type="package" version="1.0.2">scikit-learn</requirement>
+        <requirement type="package" version="1.4.2">pandas</requirement>
         <requirement type="package" version="3.6.0">h5py</requirement>
-        <requirement type="package" version="1.0.4">csvkit</requirement>
-        <requirement type="package" version="0.2.5">hyperopt</requirement>
     </requirements>
     <version_command>echo "@VERSION@"</version_command>
     <command detect_errors="aggressive">
 <![CDATA[
         python '$__tool_directory__/main.py'
+
             --workflow_file '$input_tabular_workflows'
             --tool_usage_file '$input_tabular_tool_usage'
             --cutoff_date '$data_parameters.input_cutoff_date'
             --maximum_path_length '$data_parameters.input_maximum_path_length'
-            --n_epochs '$training_parameters.n_epochs'
-            --optimize_n_epochs '$training_parameters.optimize_n_epochs'
-            --max_evals '$training_parameters.max_evals'
-            --test_share '$training_parameters.test_share'
-            --batch_size '$nn_parameters.batch_size'
-            --units '$nn_parameters.units'
-            --embedding_size '$nn_parameters.embedding_size'
+            --te_share '$training_parameters.te_share'
+            --tr_batch_size '$training_parameters.tr_batch_size'
+            --te_batch_size '$training_parameters.te_batch_size'
+            --n_train_iter '$training_parameters.n_train_iter'
+            --tr_logging_step '$training_parameters.tr_logging_step'
+            --te_logging_step '$training_parameters.te_logging_step'
+            --n_heads '$nn_parameters.n_heads'
+            --n_embed_dim '$nn_parameters.n_embed_dim'
+            --n_feed_forward_dim '$nn_parameters.n_feed_forward_dim'
             --dropout '$nn_parameters.dropout'
-            --spatial_dropout '$nn_parameters.spatial_dropout'
-            --recurrent_dropout '$nn_parameters.recurrent_dropout'
             --learning_rate '$nn_parameters.learning_rate'
             --output_model '$outfile_model'
 ]]>
@@ -34,37 +34,26 @@
     <inputs>
         <param name="input_tabular_workflows" type="data" format="tabular" label="Dataset containing workflows" help="Please provide Galaxy workflows as a tabular file."/>
         <param name="input_tabular_tool_usage" type="data" format="tabular" label="Dataset containing usage frequencies of tools" help="Please provide tools usage frequencies as a tabular file."/>
+
         <section name="data_parameters" title="Data parameters" expanded="False">
-
             <param name="input_cutoff_date" type="text" value="2017-12-01" label="Cutoff date" help="Provide a date (in the past) in yyyy-mm-dd format. The earliest date from which usage of tools will be extracted. For example, 2017-12-01 specifies that the usage of tools from this date until the data extraction date is extracted. The usage of tools before this date is not considered."/>
-
             <param name="input_maximum_path_length" type="integer" value="25" label="Maximum number of tools in a tool sequence" help="Provide an integer between 1 and 25. A workflow is divided into unique paths and this number specifies the maximum number of tools a path can have. Paths longer than this number are ignored and are not included in the deep learning training."/>
-
         </section>
         <section name="training_parameters" title="Training parameters" expanded="False">
-            <param name="max_evals" type="integer" value="20" label="Maximum number of evaluations of different configurations of parameters" help="Provide an integer. Different combinations of parameters are sampled and optimized to find the best one. This number specifies the number of different configurations sampled and tested."/>
-
-            <param name="optimize_n_epochs" type="integer" value="5" label="Number of training iterations to optimize the neural network parameters" help="Provide an integer. This number specifies the number of training iterations done for each sampled configuration while optimising the parameters."/>
-
-            <param name="n_epochs" type="integer" value="10" label="Number of training iterations" help="Provide an integer. This specifies the number of deep learning training iterations done after finding the best/optimised configuration of neural network parameters."/>
-
-            <param name="test_share" type="float" value="0.2" label="Share of the test data" help="Provide a real number between 0.0 and 1.0. This set of data is used to look through the prediction accuracy on unseen data after neural network training on an optimised configuration of parameters. It should be set to 0.0 while training for a model to be deployed to production. The minimum value can be 0.0 and maximum value should not be more than 0.5."/>
-
+            <param name="n_train_iter" type="integer" value="20" label="Maximum number of evaluations of different configurations of parameters" help="Provide an integer. Different combinations of parameters are sampled and optimized to find the best one. This number specifies the number of different configurations sampled and tested."/>
+            <param name="tr_batch_size" type="integer" value="128" label="Training batch size" help="" />
+            <param name="te_batch_size" type="integer" value="128" label="Test batch size" help=""/>
+            <param name="tr_logging_step" type="integer" value="5" label="Training log step" help="" />
+            <param name="te_logging_step" type="integer" value="5" label="Test log step" help="" />
+            <param name="te_share" type="text" value="0.2" label="Share of the test data" help="Provide a real number between 0.0 and 1.0. This set of data is used to look through the prediction accuracy on unseen data after neural network training on an optimised configuration of parameters."/>
         </section>
-        <section name="nn_parameters" title="Neural network parameters" expanded="False">
-            <param name="batch_size" type="text" value="32,256" label="Training batch size" help="Provide a comma-separated range to sample the batch size from. The training of the neural network is done using batch learning in this work. The training data is divided into equal batches and for each epoch (a training iteration), all the batches of data are trained one after another. An example: 32,256." />
 
-            <param name="units" type="text" value="32,512" label="Number of hidden recurrent units" help="Provide a comma-separated range to sample the number of hidden recurrent units. A higher value provide stronger neural network model (may lead to overfitting in case of smaller data) and smaller value leads to weaker model (may lead to underfitting in case of larger data). An example: 32,512."/>
-
-            <param name="embedding_size" type="text" value="32,512" label="Embedding vector size" help="Provide a comma-separated range to sample the embedding size for tools. A fixed-size vector is learned for each tool. This number specifies the fixed-size. An example: 32,512."/>
-
-            <param name="dropout" type="text" value="0.0,0.5" label="Dropout between neural network layers" help="Provide a comma-separated range to sample the amount of dropout to be used after neural netwrok layers. The minimum value should be 0.0 and the maximum value should be 1.0. Dropout is used to prevent or minimize overfitting after each neural network layer. An example: 0.0,0.5"/>
-
-            <param name="spatial_dropout" type="text" value="0.0,0.5" label="Dropout for the embedding layer" help="Provide a comma-separated range to sample the amount of dropout to be used after embedding layer. The minimum value should be 0.0 and the maximum value should be 1.0. Dropout is used to prevent or minimize overfitting in the embedding layer. An example: 0.0,0.5"/>
-
-            <param name="recurrent_dropout" type="text" value="0.0,0.5" label="Dropout for recurrent layers" help="Provide a comma-separated range to sample the amount of dropout to be used for the recurrent layers. The minimum value should be 0.0 and the maximum value should be 1.0. Dropout is used to prevent or minimize overfitting in the recurrent layers. An example: 0.0,0.5"/>
-
-            <param name="learning_rate" type="text" value="0.0001,0.1" label="Learning rate" help="Provide a range of positive real numbers to sample the learning rate. Learning rate defines the speed of neural network learning. A higher value will ensure fast learning and smaller value will ensure slower learning. An example: 0.0001,0.1"/>
+        <section name="nn_parameters" title="Neural network parameters" expanded="False">
+            <param name="n_heads" type="integer" value="4" label="Number of heads in Multihead attention network"/>
+            <param name="n_embed_dim" type="integer" value="128" label="Embedding dimensions"/>
+            <param name="n_feed_forward_dim" type="text" value="128" label="Number of units for feed forward network" help=""/>
+            <param name="dropout" type="text" value="0.2" label="Amount of dropout between neural network layers. E.g. 0.2 means 20%" help=""/>
+            <param name="learning_rate" type="text" value="0.001" label="Learning rate" help=""/>
         </section>
     </inputs>
     <outputs>
@@ -72,71 +61,85 @@
     </outputs>
     <tests>
         <test>
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
             <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/> 
-            <param name="max_evals" value="1"/>
-            <param name="batch_size" value="1,2"/>
-            <param name="optimize_n_epochs" value="1"/>
-            <param name="n_epochs" value="1"/>
-            <param name="test_share" value="0.2"/>
+            <param name="tr_batch_size" value="4"/>
+            <param name="te_batch_size" value="4"/>
+            <param name="n_train_iter" value="20"/>
+            <param name="tr_logging_step" value="10"/>
+            <param name="te_logging_step" value="10"/>
+            <param name="te_share" value="0.4"/>
             <output name="outfile_model">
                 <assert_contents>
-                    <has_h5_keys keys="best_parameters,class_weights,compatible_tools,data_dictionary,model_config,weight_0,weight_1,weight_2,weight_3,weight_4,weight_5,weight_6,weight_7,weight_8"/>
+                    <has_h5_keys keys="class_weights,compatible_tools,dense_2,dense_3,dropout_2,dropout_3,global_average_pooling1d,input_1,reverse_dict,standard_connections,token_and_position_embedding,top_level_model_weights,transformer_block"/>
                 </assert_contents>
             </output>
         </test>
         <test>
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
-            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="max_evals" value="1"/>
-            <param name="batch_size" value="1,2"/>
-            <param name="optimize_n_epochs" value="1"/>
-            <param name="n_epochs" value="1"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
+            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/> 
+            <param name="tr_batch_size" value="4"/>
+            <param name="te_batch_size" value="4"/>
+            <param name="n_train_iter" value="20"/>
+            <param name="tr_logging_step" value="10"/>
+            <param name="te_logging_step" value="10"/>
+            <param name="te_share" value="0.4"/>
+            <param name="n_heads" value="2"/>
+            <param name="n_embed_dim" value="32"/>
+            <param name="n_feed_forward_dim" value="32"/>
+            <param name="dropout" value="0.05"/>
+            <param name="learning_rate" value="0.0001"/>
             <output name="outfile_model">
                 <assert_contents>
-                    <has_h5_keys keys="best_parameters,class_weights,compatible_tools,data_dictionary,model_config,weight_0,weight_1,weight_2,weight_3,weight_4,weight_5,weight_6,weight_7,weight_8"/>
+                    <has_h5_keys keys="class_weights,compatible_tools,dense_2,dense_3,dropout_2,dropout_3,global_average_pooling1d,input_1,reverse_dict,standard_connections,token_and_position_embedding,top_level_model_weights,transformer_block"/>
                 </assert_contents>
             </output>
         </test>
+        
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
             <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="test_share" value="0.0"/>
+            <param name="te_share" value="0.0,0.1"/>
         </test>
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
-            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="batch_size" value="1"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
+            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/> 
+            <param name="tr_batch_size" value="1,9"/>
         </test>
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
             <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="units" value="1"/>
+            <param name="te_batch_size" value="1,1"/>
+        </test>
+        <test expect_failure="true">
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
+            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/> 
+            <param name="tr_logging_step" value="1,6"/>
         </test>
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
-            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="embedding_size" value="1"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
+            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/> 
+            <param name="n_embed_dim" value="1,6"/>
         </test>
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
             <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="dropout" value="0.1"/>
+            <param name="n_feed_forward_dim" value="1,6"/>
         </test>
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
-            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="spatial_dropout" value="0.1"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
+            <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/> 
+            <param name="dropout" value="0.1,0.2"/>
         </test>
         <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
             <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="recurrent_dropout" value="0.1"/>
+            <param name="n_heads" value="0.1"/>
         </test>
          <test expect_failure="true">
-            <param name="input_tabular_workflows" value="test_workflows" ftype="tabular"/>
+            <param name="input_tabular_workflows" value="test_workflow_connections" ftype="tabular"/>
             <param name="input_tabular_tool_usage" value="test_tool_usage" ftype="tabular"/>
-            <param name="learning_rate" value="0.0001"/>
+            <param name="learning_rate" value="0.0001,0.04"/>
         </test>
     </tests>
     <help>
@@ -188,7 +191,7 @@
     - "max_evals": The hyperparameters of the neural network are tuned using a Bayesian optimisation approach and multiple configurations are sampled from different ranges of parameters. The number specified in this parameter is the number of configurations of hyperparameters evaluated to optimise them. Higher the number, the longer is the running time of the tool.
     - "optimize_n_epochs": This number specifies how many iterations would the neural network executes to evaluate each sampled configuration.
     - "n_epochs": Once the best configuration of hyperparameters has been found, the neural network takes this configuration and runs for "n_epochs" number of times minimising the error to produce a model at the end.
-    - "test_share": It specifies the size of the test set. For example, if it is 0.5, then the test set is half of the entire data available. It should not be set to more than 0.5. This set is used for evaluating the precision on an unseen set.
+    - "te_share": It specifies the size of the test set. For example, if it is 0.5, then the test set is half of the entire data available. It should not be set to more than 0.5. This set is used for evaluating the precision on an unseen set.
     
 3. Neural network parameters:
     - "batch_size": The training of the neural network is done using batch learning in this work. The training data is divided into equal batches and for each epoch (a training iteration), all batches of data are trained one after another. A higher or lower value can unsettle the training. Therefore, this parameter should be optimised.
diff -r 4f7e6612906b -r e94dc7945639 extract_workflow_connections.py
--- a/extract_workflow_connections.py	Fri May 06 09:05:18 2022 +0000
+++ b/extract_workflow_connections.py	Sun Oct 16 11:52:10 2022 +0000
@@ -2,26 +2,26 @@
 Extract workflow paths from the tabular file containing
 input and output tools
 """
-
-import csv
 import random
 
 import utils
 
 
 class ExtractWorkflowConnections:
+
     def __init__(self):
         """ Init method. """
 
-    def collect_standard_connections(self, row):
-        published = row[8]
-        deleted = row[9]
-        has_errors = row[10]
-        if published == "t" and deleted == "f" and has_errors == "f":
-            return True
-        return False
+    def process_raw_files(self, wf_path, tool_popu_path, config):
+        """
+        Remove pipe from workflows and popularity tabular files
+        """
+        print("Removing pipe from tabular datasets...")
+        wf_frame = utils.remove_pipe(wf_path)
+        tool_popu_frame = utils.remove_pipe(tool_popu_path)
+        return wf_frame, tool_popu_frame
 
-    def read_tabular_file(self, raw_file_path):
+    def read_tabular_file(self, wf_dataframe, config):
         """
         Read tabular file and extract workflow connections
         """
@@ -32,17 +32,18 @@
         workflow_paths = list()
         unique_paths = dict()
         standard_connections = dict()
-        with open(raw_file_path, "rt") as workflow_connections_file:
-            workflow_connections = csv.reader(workflow_connections_file, delimiter="\t")
-            for index, row in enumerate(workflow_connections):
-                wf_id = str(row[0])
-                in_tool = row[3].strip()
-                out_tool = row[6].strip()
+        for index, row in wf_dataframe.iterrows():
+            row = row.tolist()
+            row = [str(item).strip() for item in row]
+            wf_id = str(row[0])
+            if row[1] > config["cutoff_date"]:
+                in_tool = row[3]
+                out_tool = row[6]
                 if wf_id not in workflows:
                     workflows[wf_id] = list()
                 if out_tool and in_tool and out_tool != in_tool:
                     workflows[wf_id].append((out_tool, in_tool))
-                    qc = self.collect_standard_connections(row)
+                    qc = self.__collect_standard_connections(row)
                     if qc:
                         i_t = utils.format_tool_id(in_tool)
                         o_t = utils.format_tool_id(out_tool)
@@ -54,15 +55,15 @@
         wf_ctr = 0
         for wf_id in workflows:
             wf_ctr += 1
-            workflow_parents[wf_id] = self.read_workflow(wf_id, workflows[wf_id])
+            workflow_parents[wf_id] = self.__read_workflow(wf_id, workflows[wf_id])
 
         for wf_id in workflow_parents:
             flow_paths = list()
             parents_graph = workflow_parents[wf_id]
-            roots, leaves = self.get_roots_leaves(parents_graph)
+            roots, leaves = self.__get_roots_leaves(parents_graph)
             for root in roots:
                 for leaf in leaves:
-                    paths = self.find_tool_paths_workflow(parents_graph, root, leaf)
+                    paths = self.__find_tool_paths_workflow(parents_graph, root, leaf)
                     # reverse the paths as they are computed from leaves to roots leaf
                     paths = [tool_path for tool_path in paths]
                     if len(paths) > 0:
@@ -84,13 +85,20 @@
         unique_paths = list(workflow_paths_dup.split("\n"))
         unique_paths = list(filter(None, unique_paths))
         random.shuffle(unique_paths)
+        print("unique_paths: {}".format(len(unique_paths)))
         no_dup_paths = list(set(unique_paths))
+        print("no_dup_paths: {}".format(len(no_dup_paths)))
+        return no_dup_paths, standard_connections
 
-        print("Finding compatible next tools...")
-        compatible_next_tools = self.set_compatible_next_tools(no_dup_paths)
-        return unique_paths, compatible_next_tools, standard_connections
+    def __collect_standard_connections(self, row):
+        published = row[8].strip()
+        deleted = row[9].strip()
+        has_errors = row[10].strip()
+        if published == "t" and deleted == "f" and has_errors == "f":
+            return True
+        return False
 
-    def set_compatible_next_tools(self, workflow_paths):
+    def __set_compatible_next_tools(self, workflow_paths):
         """
         Find next tools for each tool
         """
@@ -109,7 +117,7 @@
             next_tools[tool] = ",".join(list(set(next_tools[tool].split(","))))
         return next_tools
 
-    def read_workflow(self, wf_id, workflow_rows):
+    def __read_workflow(self, wf_id, workflow_rows):
         """
         Read all connections for a workflow
         """
@@ -123,7 +131,7 @@
                 tool_parents[out_tool].append(in_tool)
         return tool_parents
 
-    def get_roots_leaves(self, graph):
+    def __get_roots_leaves(self, graph):
         roots = list()
         leaves = list()
         all_parents = list()
@@ -135,7 +143,7 @@
         leaves = list(set(children).difference(set(all_parents)))
         return roots, leaves
 
-    def find_tool_paths_workflow(self, graph, start, end, path=[]):
+    def __find_tool_paths_workflow(self, graph, start, end, path=[]):
         path = path + [end]
         if start == end:
             return [path]
@@ -143,9 +151,7 @@
         if end in graph:
             for node in graph[end]:
                 if node not in path:
-                    new_tools_paths = self.find_tool_paths_workflow(
-                        graph, start, node, path
-                    )
+                    new_tools_paths = self.__find_tool_paths_workflow(graph, start, node, path)
                     for tool_path in new_tools_paths:
                         path_list.append(tool_path)
         return path_list
diff -r 4f7e6612906b -r e94dc7945639 main.py
--- a/main.py	Fri May 06 09:05:18 2022 +0000
+++ b/main.py	Sun Oct 16 11:52:10 2022 +0000
@@ -1,260 +1,36 @@
 """
 Predict next tools in the Galaxy workflows
-using machine learning (recurrent neural network)
+using deep learning learning (Transformers)
 """
-
 import argparse
 import time
 
 import extract_workflow_connections
-import keras.callbacks as callbacks
-import numpy as np
-import optimise_hyperparameters
 import prepare_data
-import utils
-
-
-class PredictTool:
-    def __init__(self, num_cpus):
-        """ Init method. """
-
-    def find_train_best_network(
-        self,
-        network_config,
-        reverse_dictionary,
-        train_data,
-        train_labels,
-        test_data,
-        test_labels,
-        n_epochs,
-        class_weights,
-        usage_pred,
-        standard_connections,
-        tool_freq,
-        tool_tr_samples,
-    ):
-        """
-        Define recurrent neural network and train sequential data
-        """
-        # get tools with lowest representation
-        lowest_tool_ids = utils.get_lowest_tools(tool_freq)
-
-        print("Start hyperparameter optimisation...")
-        hyper_opt = optimise_hyperparameters.HyperparameterOptimisation()
-        best_params, best_model = hyper_opt.train_model(
-            network_config,
-            reverse_dictionary,
-            train_data,
-            train_labels,
-            test_data,
-            test_labels,
-            tool_tr_samples,
-            class_weights,
-        )
-
-        # define callbacks
-        early_stopping = callbacks.EarlyStopping(
-            monitor="loss",
-            mode="min",
-            verbose=1,
-            min_delta=1e-1,
-            restore_best_weights=True,
-        )
-        predict_callback_test = PredictCallback(
-            test_data,
-            test_labels,
-            reverse_dictionary,
-            n_epochs,
-            usage_pred,
-            standard_connections,
-            lowest_tool_ids,
-        )
-
-        callbacks_list = [predict_callback_test, early_stopping]
-        batch_size = int(best_params["batch_size"])
-
-        print("Start training on the best model...")
-        train_performance = dict()
-        trained_model = best_model.fit_generator(
-            utils.balanced_sample_generator(
-                train_data,
-                train_labels,
-                batch_size,
-                tool_tr_samples,
-                reverse_dictionary,
-            ),
-            steps_per_epoch=len(train_data) // batch_size,
-            epochs=n_epochs,
-            callbacks=callbacks_list,
-            validation_data=(test_data, test_labels),
-            verbose=2,
-            shuffle=True,
-        )
-        train_performance["validation_loss"] = np.array(
-            trained_model.history["val_loss"]
-        )
-        train_performance["precision"] = predict_callback_test.precision
-        train_performance["usage_weights"] = predict_callback_test.usage_weights
-        train_performance[
-            "published_precision"
-        ] = predict_callback_test.published_precision
-        train_performance[
-            "lowest_pub_precision"
-        ] = predict_callback_test.lowest_pub_precision
-        train_performance[
-            "lowest_norm_precision"
-        ] = predict_callback_test.lowest_norm_precision
-        train_performance["train_loss"] = np.array(trained_model.history["loss"])
-        train_performance["model"] = best_model
-        train_performance["best_parameters"] = best_params
-        return train_performance
-
-
-class PredictCallback(callbacks.Callback):
-    def __init__(
-        self,
-        test_data,
-        test_labels,
-        reverse_data_dictionary,
-        n_epochs,
-        usg_scores,
-        standard_connections,
-        lowest_tool_ids,
-    ):
-        self.test_data = test_data
-        self.test_labels = test_labels
-        self.reverse_data_dictionary = reverse_data_dictionary
-        self.precision = list()
-        self.usage_weights = list()
-        self.published_precision = list()
-        self.n_epochs = n_epochs
-        self.pred_usage_scores = usg_scores
-        self.standard_connections = standard_connections
-        self.lowest_tool_ids = lowest_tool_ids
-        self.lowest_pub_precision = list()
-        self.lowest_norm_precision = list()
-
-    def on_epoch_end(self, epoch, logs={}):
-        """
-        Compute absolute and compatible precision for test data
-        """
-        if len(self.test_data) > 0:
-            (
-                usage_weights,
-                precision,
-                precision_pub,
-                low_pub_prec,
-                low_norm_prec,
-                low_num,
-            ) = utils.verify_model(
-                self.model,
-                self.test_data,
-                self.test_labels,
-                self.reverse_data_dictionary,
-                self.pred_usage_scores,
-                self.standard_connections,
-                self.lowest_tool_ids,
-            )
-            self.precision.append(precision)
-            self.usage_weights.append(usage_weights)
-            self.published_precision.append(precision_pub)
-            self.lowest_pub_precision.append(low_pub_prec)
-            self.lowest_norm_precision.append(low_norm_prec)
-            print("Epoch %d usage weights: %s" % (epoch + 1, usage_weights))
-            print("Epoch %d normal precision: %s" % (epoch + 1, precision))
-            print("Epoch %d published precision: %s" % (epoch + 1, precision_pub))
-            print("Epoch %d lowest published precision: %s" % (epoch + 1, low_pub_prec))
-            print("Epoch %d lowest normal precision: %s" % (epoch + 1, low_norm_prec))
-            print(
-                "Epoch %d number of test samples with lowest tool ids: %s"
-                % (epoch + 1, low_num)
-            )
-
+import train_transformer
 
 if __name__ == "__main__":
     start_time = time.time()
 
     arg_parser = argparse.ArgumentParser()
-    arg_parser.add_argument(
-        "-wf", "--workflow_file", required=True, help="workflows tabular file"
-    )
-    arg_parser.add_argument(
-        "-tu", "--tool_usage_file", required=True, help="tool usage file"
-    )
-    arg_parser.add_argument(
-        "-om", "--output_model", required=True, help="trained model file"
-    )
+    arg_parser.add_argument("-wf", "--workflow_file", required=True, help="workflows tabular file")
+    arg_parser.add_argument("-tu", "--tool_usage_file", required=True, help="tool usage file")
     # data parameters
-    arg_parser.add_argument(
-        "-cd",
-        "--cutoff_date",
-        required=True,
-        help="earliest date for taking tool usage",
-    )
-    arg_parser.add_argument(
-        "-pl",
-        "--maximum_path_length",
-        required=True,
-        help="maximum length of tool path",
-    )
-    arg_parser.add_argument(
-        "-ep",
-        "--n_epochs",
-        required=True,
-        help="number of iterations to run to create model",
-    )
-    arg_parser.add_argument(
-        "-oe",
-        "--optimize_n_epochs",
-        required=True,
-        help="number of iterations to run to find best model parameters",
-    )
-    arg_parser.add_argument(
-        "-me",
-        "--max_evals",
-        required=True,
-        help="maximum number of configuration evaluations",
-    )
-    arg_parser.add_argument(
-        "-ts",
-        "--test_share",
-        required=True,
-        help="share of data to be used for testing",
-    )
+    arg_parser.add_argument("-cd", "--cutoff_date", required=True, help="earliest date for taking tool usage")
+    arg_parser.add_argument("-pl", "--maximum_path_length", required=True, help="maximum length of tool path")
+    arg_parser.add_argument("-om", "--output_model", required=True, help="trained model path")
     # neural network parameters
-    arg_parser.add_argument(
-        "-bs",
-        "--batch_size",
-        required=True,
-        help="size of the tranining batch i.e. the number of samples per batch",
-    )
-    arg_parser.add_argument(
-        "-ut", "--units", required=True, help="number of hidden recurrent units"
-    )
-    arg_parser.add_argument(
-        "-es",
-        "--embedding_size",
-        required=True,
-        help="size of the fixed vector learned for each tool",
-    )
-    arg_parser.add_argument(
-        "-dt", "--dropout", required=True, help="percentage of neurons to be dropped"
-    )
-    arg_parser.add_argument(
-        "-sd",
-        "--spatial_dropout",
-        required=True,
-        help="1d dropout used for embedding layer",
-    )
-    arg_parser.add_argument(
-        "-rd",
-        "--recurrent_dropout",
-        required=True,
-        help="dropout for the recurrent layers",
-    )
-    arg_parser.add_argument(
-        "-lr", "--learning_rate", required=True, help="learning rate"
-    )
+    arg_parser.add_argument("-ti", "--n_train_iter", required=True, help="Number of training iterations run to create model")
+    arg_parser.add_argument("-nhd", "--n_heads", required=True, help="Number of head in transformer's multi-head attention")
+    arg_parser.add_argument("-ed", "--n_embed_dim", required=True, help="Embedding dimension")
+    arg_parser.add_argument("-fd", "--n_feed_forward_dim", required=True, help="Feed forward network dimension")
+    arg_parser.add_argument("-dt", "--dropout", required=True, help="Percentage of neurons to be dropped")
+    arg_parser.add_argument("-lr", "--learning_rate", required=True, help="Learning rate")
+    arg_parser.add_argument("-ts", "--te_share", required=True, help="Share of data to be used for testing")
+    arg_parser.add_argument("-trbs", "--tr_batch_size", required=True, help="Train batch size")
+    arg_parser.add_argument("-trlg", "--tr_logging_step", required=True, help="Train logging frequency")
+    arg_parser.add_argument("-telg", "--te_logging_step", required=True, help="Test logging frequency")
+    arg_parser.add_argument("-tebs", "--te_batch_size", required=True, help="Test batch size")
 
     # get argument values
     args = vars(arg_parser.parse_args())
@@ -262,89 +38,48 @@
     workflows_path = args["workflow_file"]
     cutoff_date = args["cutoff_date"]
     maximum_path_length = int(args["maximum_path_length"])
+
+    n_train_iter = int(args["n_train_iter"])
+    te_share = float(args["te_share"])
+    tr_batch_size = int(args["tr_batch_size"])
+    te_batch_size = int(args["te_batch_size"])
+
+    n_heads = int(args["n_heads"])
+    feed_forward_dim = int(args["n_feed_forward_dim"])
+    embedding_dim = int(args["n_embed_dim"])
+    dropout = float(args["dropout"])
+    learning_rate = float(args["learning_rate"])
+    te_logging_step = int(args["te_logging_step"])
+    tr_logging_step = int(args["tr_logging_step"])
     trained_model_path = args["output_model"]
-    n_epochs = int(args["n_epochs"])
-    optimize_n_epochs = int(args["optimize_n_epochs"])
-    max_evals = int(args["max_evals"])
-    test_share = float(args["test_share"])
-    batch_size = args["batch_size"]
-    units = args["units"]
-    embedding_size = args["embedding_size"]
-    dropout = args["dropout"]
-    spatial_dropout = args["spatial_dropout"]
-    recurrent_dropout = args["recurrent_dropout"]
-    learning_rate = args["learning_rate"]
-    num_cpus = 16
 
     config = {
-        "cutoff_date": cutoff_date,
-        "maximum_path_length": maximum_path_length,
-        "n_epochs": n_epochs,
-        "optimize_n_epochs": optimize_n_epochs,
-        "max_evals": max_evals,
-        "test_share": test_share,
-        "batch_size": batch_size,
-        "units": units,
-        "embedding_size": embedding_size,
-        "dropout": dropout,
-        "spatial_dropout": spatial_dropout,
-        "recurrent_dropout": recurrent_dropout,
-        "learning_rate": learning_rate,
+        'cutoff_date': cutoff_date,
+        'maximum_path_length': maximum_path_length,
+        'n_train_iter': n_train_iter,
+        'n_heads': n_heads,
+        'feed_forward_dim': feed_forward_dim,
+        'embedding_dim': embedding_dim,
+        'dropout': dropout,
+        'learning_rate': learning_rate,
+        'te_share': te_share,
+        'te_logging_step': te_logging_step,
+        'tr_logging_step': tr_logging_step,
+        'tr_batch_size': tr_batch_size,
+        'te_batch_size': te_batch_size,
+        'trained_model_path': trained_model_path
     }
-
+    print("Preprocessing workflows...")
     # Extract and process workflows
     connections = extract_workflow_connections.ExtractWorkflowConnections()
-    (
-        workflow_paths,
-        compatible_next_tools,
-        standard_connections,
-    ) = connections.read_tabular_file(workflows_path)
+    # Process raw workflow file
+    wf_dataframe, usage_df = connections.process_raw_files(workflows_path, tool_usage_path, config)
+    workflow_paths, pub_conn = connections.read_tabular_file(wf_dataframe, config)
     # Process the paths from workflows
     print("Dividing data...")
-    data = prepare_data.PrepareData(maximum_path_length, test_share)
-    (
-        train_data,
-        train_labels,
-        test_data,
-        test_labels,
-        data_dictionary,
-        reverse_dictionary,
-        class_weights,
-        usage_pred,
-        train_tool_freq,
-        tool_tr_samples,
-    ) = data.get_data_labels_matrices(
-        workflow_paths,
-        tool_usage_path,
-        cutoff_date,
-        compatible_next_tools,
-        standard_connections,
-    )
-    # find the best model and start training
-    predict_tool = PredictTool(num_cpus)
-    # start training with weighted classes
-    print("Training with weighted classes and samples ...")
-    results_weighted = predict_tool.find_train_best_network(
-        config,
-        reverse_dictionary,
-        train_data,
-        train_labels,
-        test_data,
-        test_labels,
-        n_epochs,
-        class_weights,
-        usage_pred,
-        standard_connections,
-        train_tool_freq,
-        tool_tr_samples,
-    )
-    utils.save_model(
-        results_weighted,
-        data_dictionary,
-        compatible_next_tools,
-        trained_model_path,
-        class_weights,
-        standard_connections,
-    )
+    data = prepare_data.PrepareData(maximum_path_length, te_share)
+    train_data, train_labels, test_data, test_labels, f_dict, r_dict, c_wts, c_tools, tr_tool_freq = data.get_data_labels_matrices(workflow_paths, usage_df, cutoff_date, pub_conn)
+    print(train_data.shape, train_labels.shape, test_data.shape, test_labels.shape)
+    train_transformer.create_enc_transformer(train_data, train_labels, test_data, test_labels, f_dict, r_dict, c_wts, c_tools, pub_conn, tr_tool_freq, config)
     end_time = time.time()
     print("Program finished in %s seconds" % str(end_time - start_time))
diff -r 4f7e6612906b -r e94dc7945639 optimise_hyperparameters.py
--- a/optimise_hyperparameters.py	Fri May 06 09:05:18 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,147 +0,0 @@
-"""
-Find the optimal combination of hyperparameters
-"""
-
-import numpy as np
-import utils
-from hyperopt import fmin, hp, STATUS_OK, tpe, Trials
-from tensorflow.keras.callbacks import EarlyStopping
-from tensorflow.keras.layers import Dense, Dropout, Embedding, GRU, SpatialDropout1D
-from tensorflow.keras.models import Sequential
-from tensorflow.keras.optimizers import RMSprop
-
-
-class HyperparameterOptimisation:
-    def __init__(self):
-        """ Init method. """
-
-    def train_model(
-        self,
-        config,
-        reverse_dictionary,
-        train_data,
-        train_labels,
-        test_data,
-        test_labels,
-        tool_tr_samples,
-        class_weights,
-    ):
-        """
-        Train a model and report accuracy
-        """
-        # convert items to integer
-        l_batch_size = list(map(int, config["batch_size"].split(",")))
-        l_embedding_size = list(map(int, config["embedding_size"].split(",")))
-        l_units = list(map(int, config["units"].split(",")))
-
-        # convert items to float
-        l_learning_rate = list(map(float, config["learning_rate"].split(",")))
-        l_dropout = list(map(float, config["dropout"].split(",")))
-        l_spatial_dropout = list(map(float, config["spatial_dropout"].split(",")))
-        l_recurrent_dropout = list(map(float, config["recurrent_dropout"].split(",")))
-
-        optimize_n_epochs = int(config["optimize_n_epochs"])
-
-        # get dimensions
-        dimensions = len(reverse_dictionary) + 1
-        best_model_params = dict()
-        early_stopping = EarlyStopping(
-            monitor="val_loss",
-            mode="min",
-            verbose=1,
-            min_delta=1e-1,
-            restore_best_weights=True,
-        )
-
-        # specify the search space for finding the best combination of parameters using Bayesian optimisation
-        params = {
-            "embedding_size": hp.quniform(
-                "embedding_size", l_embedding_size[0], l_embedding_size[1], 1
-            ),
-            "units": hp.quniform("units", l_units[0], l_units[1], 1),
-            "batch_size": hp.quniform(
-                "batch_size", l_batch_size[0], l_batch_size[1], 1
-            ),
-            "learning_rate": hp.loguniform(
-                "learning_rate", np.log(l_learning_rate[0]), np.log(l_learning_rate[1])
-            ),
-            "dropout": hp.uniform("dropout", l_dropout[0], l_dropout[1]),
-            "spatial_dropout": hp.uniform(
-                "spatial_dropout", l_spatial_dropout[0], l_spatial_dropout[1]
-            ),
-            "recurrent_dropout": hp.uniform(
-                "recurrent_dropout", l_recurrent_dropout[0], l_recurrent_dropout[1]
-            ),
-        }
-
-        def create_model(params):
-            model = Sequential()
-            model.add(
-                Embedding(dimensions, int(params["embedding_size"]), mask_zero=True)
-            )
-            model.add(SpatialDropout1D(params["spatial_dropout"]))
-            model.add(
-                GRU(
-                    int(params["units"]),
-                    dropout=params["dropout"],
-                    recurrent_dropout=params["recurrent_dropout"],
-                    return_sequences=True,
-                    activation="elu",
-                )
-            )
-            model.add(Dropout(params["dropout"]))
-            model.add(
-                GRU(
-                    int(params["units"]),
-                    dropout=params["dropout"],
-                    recurrent_dropout=params["recurrent_dropout"],
-                    return_sequences=False,
-                    activation="elu",
-                )
-            )
-            model.add(Dropout(params["dropout"]))
-            model.add(Dense(2 * dimensions, activation="sigmoid"))
-            optimizer_rms = RMSprop(lr=params["learning_rate"])
-            batch_size = int(params["batch_size"])
-            model.compile(
-                loss=utils.weighted_loss(class_weights), optimizer=optimizer_rms
-            )
-            print(model.summary())
-            model_fit = model.fit(
-                utils.balanced_sample_generator(
-                    train_data,
-                    train_labels,
-                    batch_size,
-                    tool_tr_samples,
-                    reverse_dictionary,
-                ),
-                steps_per_epoch=len(train_data) // batch_size,
-                epochs=optimize_n_epochs,
-                callbacks=[early_stopping],
-                validation_data=(test_data, test_labels),
-                verbose=2,
-                shuffle=True,
-            )
-            return {
-                "loss": model_fit.history["val_loss"][-1],
-                "status": STATUS_OK,
-                "model": model,
-            }
-
-        # minimize the objective function using the set of parameters above
-        trials = Trials()
-        learned_params = fmin(
-            create_model,
-            params,
-            trials=trials,
-            algo=tpe.suggest,
-            max_evals=int(config["max_evals"]),
-        )
-        best_model = trials.results[np.argmin([r["loss"] for r in trials.results])][
-            "model"
-        ]
-        # set the best params with respective values
-        for item in learned_params:
-            item_val = learned_params[item]
-            best_model_params[item] = item_val
-        return best_model_params, best_model
diff -r 4f7e6612906b -r e94dc7945639 predict_tool_usage.py
--- a/predict_tool_usage.py	Fri May 06 09:05:18 2022 +0000
+++ b/predict_tool_usage.py	Sun Oct 16 11:52:10 2022 +0000
@@ -3,9 +3,6 @@
 """
 
 import collections
-import csv
-import os
-import warnings
 
 import numpy as np
 import utils
@@ -13,40 +10,36 @@
 from sklearn.pipeline import Pipeline
 from sklearn.svm import SVR
 
-warnings.filterwarnings("ignore")
-
-main_path = os.getcwd()
-
 
 class ToolPopularity:
+
     def __init__(self):
         """ Init method. """
 
-    def extract_tool_usage(self, tool_usage_file, cutoff_date, dictionary):
+    def extract_tool_usage(self, tool_usage_df, cutoff_date, dictionary):
         """
         Extract the tool usage over time for each tool
         """
         tool_usage_dict = dict()
         all_dates = list()
         all_tool_list = list(dictionary.keys())
-        with open(tool_usage_file, "rt") as usage_file:
-            tool_usage = csv.reader(usage_file, delimiter="\t")
-            for index, row in enumerate(tool_usage):
-                row = [item.strip() for item in row]
-                if (str(row[1]).strip() > cutoff_date) is True:
-                    tool_id = utils.format_tool_id(row[0])
-                    if tool_id in all_tool_list:
-                        all_dates.append(row[1])
-                        if tool_id not in tool_usage_dict:
-                            tool_usage_dict[tool_id] = dict()
-                            tool_usage_dict[tool_id][row[1]] = int(row[2])
+        for index, row in tool_usage_df.iterrows():
+            row = row.tolist()
+            row = [str(item).strip() for item in row]
+            if (row[1] > cutoff_date) is True:
+                tool_id = utils.format_tool_id(row[0])
+                if tool_id in all_tool_list:
+                    all_dates.append(row[1])
+                    if tool_id not in tool_usage_dict:
+                        tool_usage_dict[tool_id] = dict()
+                        tool_usage_dict[tool_id][row[1]] = int(float(row[2]))
+                    else:
+                        curr_date = row[1]
+                        # merge the usage of different version of tools into one
+                        if curr_date in tool_usage_dict[tool_id]:
+                            tool_usage_dict[tool_id][curr_date] += int(float(row[2]))
                         else:
-                            curr_date = row[1]
-                            # merge the usage of different version of tools into one
-                            if curr_date in tool_usage_dict[tool_id]:
-                                tool_usage_dict[tool_id][curr_date] += int(row[2])
-                            else:
-                                tool_usage_dict[tool_id][curr_date] = int(row[2])
+                            tool_usage_dict[tool_id][curr_date] = int(float(row[2]))
         # get unique dates
         unique_dates = list(set(all_dates))
         for tool in tool_usage_dict:
@@ -66,25 +59,17 @@
         """
         epsilon = 0.0
         cv = 5
-        s_typ = "neg_mean_absolute_error"
+        s_typ = 'neg_mean_absolute_error'
         n_jobs = 4
         s_error = 1
         tr_score = False
         try:
-            pipe = Pipeline(steps=[("regressor", SVR(gamma="scale"))])
+            pipe = Pipeline(steps=[('regressor', SVR(gamma='scale'))])
             param_grid = {
-                "regressor__kernel": ["rbf", "poly", "linear"],
-                "regressor__degree": [2, 3],
+                'regressor__kernel': ['rbf', 'poly', 'linear'],
+                'regressor__degree': [2, 3]
             }
-            search = GridSearchCV(
-                pipe,
-                param_grid,
-                cv=cv,
-                scoring=s_typ,
-                n_jobs=n_jobs,
-                error_score=s_error,
-                return_train_score=tr_score,
-            )
+            search = GridSearchCV(pipe, param_grid, cv=cv, scoring=s_typ, n_jobs=n_jobs, error_score=s_error, return_train_score=tr_score)
             search.fit(x_reshaped, y_reshaped.ravel())
             model = search.best_estimator_
             # set the next time point to get prediction for
diff -r 4f7e6612906b -r e94dc7945639 prepare_data.py
--- a/prepare_data.py	Fri May 06 09:05:18 2022 +0000
+++ b/prepare_data.py	Sun Oct 16 11:52:10 2022 +0000
@@ -5,16 +5,15 @@
 """
 
 import collections
-import os
 import random
 
 import numpy as np
 import predict_tool_usage
-
-main_path = os.getcwd()
+from sklearn.model_selection import train_test_split
 
 
 class PrepareData:
+
     def __init__(self, max_seq_length, test_data_share):
         """ Init method. """
         self.max_tool_sequence_len = max_seq_length
@@ -26,7 +25,7 @@
         """
         tokens = list()
         raw_paths = workflow_paths
-        raw_paths = [x.replace("\n", "") for x in raw_paths]
+        raw_paths = [x.replace("\n", '') for x in raw_paths]
         for item in raw_paths:
             split_items = item.split(",")
             for token in split_items:
@@ -34,12 +33,7 @@
                     tokens.append(token)
         tokens = list(set(tokens))
         tokens = np.array(tokens)
-        tokens = np.reshape(
-            tokens,
-            [
-                -1,
-            ],
-        )
+        tokens = np.reshape(tokens, [-1, ])
         return tokens, raw_paths
 
     def create_new_dict(self, new_data_dict):
@@ -62,116 +56,110 @@
         """
         count = collections.Counter(words).most_common()
         dictionary = dict()
-        for word, _ in count:
+        for index, (word, _) in enumerate(count):
+            word = word.lstrip()
+            word = word.rstrip()
             dictionary[word] = len(dictionary) + 1
-            word = word.strip()
-        dictionary, reverse_dictionary = self.assemble_dictionary(
-            dictionary, old_data_dictionary
-        )
+        dictionary, reverse_dictionary = self.assemble_dictionary(dictionary, old_data_dictionary)
         return dictionary, reverse_dictionary
 
     def decompose_paths(self, paths, dictionary):
         """
         Decompose the paths to variable length sub-paths keeping the first tool fixed
         """
+        max_len = 0
         sub_paths_pos = list()
         for index, item in enumerate(paths):
             tools = item.split(",")
             len_tools = len(tools)
-            if len_tools <= self.max_tool_sequence_len:
-                for window in range(1, len_tools):
-                    sequence = tools[0: window + 1]
-                    tools_pos = [
-                        str(dictionary[str(tool_item)]) for tool_item in sequence
-                    ]
-                    if len(tools_pos) > 1:
-                        sub_paths_pos.append(",".join(tools_pos))
+            if len_tools > max_len:
+                max_len = len_tools
+            if len_tools < self.max_tool_sequence_len:
+                sequence = tools[0: len_tools]
+                tools_pos = [str(dictionary[str(tool_item)]) for tool_item in sequence]
+                if len(tools_pos) > 1:
+                    sub_paths_pos.append(",".join(tools_pos))
         sub_paths_pos = list(set(sub_paths_pos))
+        print("Max length of tools: ", max_len)
         return sub_paths_pos
 
-    def prepare_paths_labels_dictionary(
-        self, dictionary, reverse_dictionary, paths, compatible_next_tools
-    ):
-        """
-        Create a dictionary of sequences with their labels for training and test paths
-        """
-        paths_labels = dict()
-        random.shuffle(paths)
-        for item in paths:
-            if item and item not in "":
-                tools = item.split(",")
-                label = tools[-1]
-                train_tools = tools[: len(tools) - 1]
-                last_but_one_name = reverse_dictionary[int(train_tools[-1])]
-                try:
-                    compatible_tools = compatible_next_tools[last_but_one_name].split(
-                        ","
-                    )
-                except Exception:
-                    continue
-                if len(compatible_tools) > 0:
-                    compatible_tools_ids = [
-                        str(dictionary[x]) for x in compatible_tools
-                    ]
-                    compatible_tools_ids.append(label)
-                    composite_labels = ",".join(compatible_tools_ids)
-                train_tools = ",".join(train_tools)
-                if train_tools in paths_labels:
-                    paths_labels[train_tools] += "," + composite_labels
-                else:
-                    paths_labels[train_tools] = composite_labels
-        for item in paths_labels:
-            paths_labels[item] = ",".join(list(set(paths_labels[item].split(","))))
-        return paths_labels
+    def prepare_input_one_target_paths(self, dictionary, reverse_dictionary, paths):
+        input_target_paths = dict()
+        compatible_tools = dict()
+        d_size = 0
+        for i, item in enumerate(paths):
+            input_tools = item.split(",")
+            tool_seq = input_tools
+            i_tools = ",".join(tool_seq[0:-1])
+            last_i_tool = i_tools.split(",")[-1]
+            if last_i_tool not in compatible_tools:
+                compatible_tools[last_i_tool] = list()
+            t_tools = tool_seq[-1]
+            if t_tools not in compatible_tools[last_i_tool]:
+                compatible_tools[last_i_tool].append(t_tools)
+            if i_tools not in input_target_paths:
+                input_target_paths[i_tools] = list()
+            if t_tools not in input_target_paths[i_tools]:
+                input_target_paths[i_tools].append(t_tools)
+            if i_tools not in input_target_paths:
+                input_target_paths[i_tools] = list()
+            if t_tools not in input_target_paths[i_tools]:
+                input_target_paths[i_tools].append(t_tools)
+        for item in input_target_paths:
+            d_size += len(input_target_paths[item])
+        print("Dataset size:", d_size)
+        return input_target_paths, compatible_tools, d_size
 
-    def pad_test_paths(self, paths_dictionary, num_classes):
-        """
-        Add padding to the tools sequences and create multi-hot encoded labels
-        """
-        size_data = len(paths_dictionary)
-        data_mat = np.zeros([size_data, self.max_tool_sequence_len])
-        label_mat = np.zeros([size_data, num_classes + 1])
-        train_counter = 0
-        for train_seq, train_label in list(paths_dictionary.items()):
-            positions = train_seq.split(",")
-            start_pos = self.max_tool_sequence_len - len(positions)
-            for id_pos, pos in enumerate(positions):
-                data_mat[train_counter][start_pos + id_pos] = int(pos)
-            for label_item in train_label.split(","):
-                label_mat[train_counter][int(label_item)] = 1.0
-            train_counter += 1
-        return data_mat, label_mat
+    def prepare_input_target_paths(self, dictionary, reverse_dictionary, paths):
+        input_target_paths = dict()
+        compatible_tools = dict()
+        d_size = 0
+        for i, item in enumerate(paths):
+            input_tools = item.split(",")
+            ctr = 0
+            for ctr in range(len(input_tools) - 1):
+                # uncomment this for one token target idea
+                tool_seq = input_tools[0: ctr + 2]
+                i_tools = ",".join(tool_seq[0:-1])
+                last_i_tool = i_tools.split(",")[-1]
+                if last_i_tool not in compatible_tools:
+                    compatible_tools[last_i_tool] = list()
+                t_tools = tool_seq[-1]
+                if t_tools not in compatible_tools[last_i_tool]:
+                    compatible_tools[last_i_tool].append(t_tools)
+                if i_tools not in input_target_paths:
+                    input_target_paths[i_tools] = list()
+                if t_tools not in input_target_paths[i_tools]:
+                    input_target_paths[i_tools].append(t_tools)
+                if i_tools not in input_target_paths:
+                    input_target_paths[i_tools] = list()
+                if t_tools not in input_target_paths[i_tools]:
+                    input_target_paths[i_tools].append(t_tools)
+        for item in input_target_paths:
+            d_size += len(input_target_paths[item])
+        print("Dataset size:", d_size)
+        return input_target_paths, compatible_tools, d_size
 
-    def pad_paths(
-        self, paths_dictionary, num_classes, standard_connections, reverse_dictionary
-    ):
-        """
-        Add padding to the tools sequences and create multi-hot encoded labels
-        """
-        size_data = len(paths_dictionary)
-        data_mat = np.zeros([size_data, self.max_tool_sequence_len])
-        label_mat = np.zeros([size_data, 2 * (num_classes + 1)])
-        pos_flag = 1.0
+    def pad_paths_one_tool_target(self, multi_paths, compatible_tools, d_size, rev_dict, dictionary):
+        d_size = len(multi_paths)
+        input_mat = np.zeros([d_size, self.max_tool_sequence_len])
+        target_mat = np.zeros([d_size, len(dictionary) + 1])
         train_counter = 0
-        for train_seq, train_label in list(paths_dictionary.items()):
-            pub_connections = list()
-            positions = train_seq.split(",")
-            last_tool_id = positions[-1]
-            last_tool_name = reverse_dictionary[int(last_tool_id)]
-            start_pos = self.max_tool_sequence_len - len(positions)
-            for id_pos, pos in enumerate(positions):
-                data_mat[train_counter][start_pos + id_pos] = int(pos)
-            if last_tool_name in standard_connections:
-                pub_connections = standard_connections[last_tool_name]
-            for label_item in train_label.split(","):
-                label_pos = int(label_item)
-                label_row = label_mat[train_counter]
-                if reverse_dictionary[label_pos] in pub_connections:
-                    label_row[label_pos] = pos_flag
-                else:
-                    label_row[label_pos + num_classes + 1] = pos_flag
+        for input_seq, target_seq_tools in list(multi_paths.items()):
+            input_seq_tools = input_seq.split(",")
+            last_i_tool = input_seq_tools[-1]
+            for id_pos, pos in enumerate(input_seq_tools):
+                input_mat[train_counter][id_pos] = int(pos)
+            if last_i_tool in compatible_tools:
+                compatible_targets = compatible_tools[last_i_tool]
+            for k, t_label in enumerate(target_seq_tools):
+                target_mat[train_counter][int(t_label)] = 1
+            for c_tool in compatible_targets:
+                target_mat[train_counter][int(c_tool)] = 1
             train_counter += 1
-        return data_mat, label_mat
+        print("Final data size: ", input_mat.shape, target_mat.shape)
+        train_data, test_data, train_labels, test_labels = train_test_split(input_mat, target_mat, test_size=self.test_share, random_state=42)
+        return train_data, train_labels, test_data, test_labels
 
     def split_test_train_data(self, multilabels_paths):
         """
@@ -221,6 +209,27 @@
             class_weights[key] = np.round(np.log(u_score), 6)
         return class_weights
 
+    def get_train_tool_labels_freq(self, train_paths, reverse_dictionary):
+        """
+        Get the frequency of last tool of each tool sequence
+        to estimate the frequency of tool sequences
+        """
+        last_tool_freq = dict()
+        freq_dict_names = dict()
+        for path in train_paths:
+            tools_pos = np.where(path > 0)[0]
+            path_pos = tools_pos
+            path_pos = [str(int(item)) for item in path_pos]
+
+            for tool_pos in path_pos:
+                if tool_pos not in last_tool_freq:
+                    last_tool_freq[tool_pos] = 0
+                    freq_dict_names[reverse_dictionary[int(tool_pos)]] = 0
+                last_tool_freq[tool_pos] += 1
+                freq_dict_names[reverse_dictionary[int(tool_pos)]] += 1
+        sorted_dict = dict(sorted(last_tool_freq.items(), key=lambda kv: kv[1], reverse=True))
+        return sorted_dict
+
     def get_train_last_tool_freq(self, train_paths, reverse_dictionary):
         """
         Get the frequency of last tool of each tool sequence
@@ -229,13 +238,17 @@
         last_tool_freq = dict()
         freq_dict_names = dict()
         for path in train_paths:
-            last_tool = path.split(",")[-1]
+            tools_pos = np.where(path > 0)[0]
+            path_pos = path[tools_pos]
+            path_pos = [str(int(item)) for item in path_pos]
+            last_tool = path_pos[-1]
             if last_tool not in last_tool_freq:
                 last_tool_freq[last_tool] = 0
                 freq_dict_names[reverse_dictionary[int(last_tool)]] = 0
             last_tool_freq[last_tool] += 1
             freq_dict_names[reverse_dictionary[int(last_tool)]] += 1
-        return last_tool_freq
+        sorted_dict = dict(sorted(last_tool_freq.items(), key=lambda kv: kv[1], reverse=True))
+        return sorted_dict
 
     def get_toolid_samples(self, train_data, l_tool_freq):
         l_tool_tr_samples = dict()
@@ -248,22 +261,13 @@
                     l_tool_tr_samples[last_tool_id].append(index)
         return l_tool_tr_samples
 
-    def get_data_labels_matrices(
-        self,
-        workflow_paths,
-        tool_usage_path,
-        cutoff_date,
-        compatible_next_tools,
-        standard_connections,
-        old_data_dictionary={},
-    ):
+    def get_data_labels_matrices(self, workflow_paths, usage_df, cutoff_date, standard_connections, old_data_dictionary={}):
         """
         Convert the training and test paths into corresponding numpy matrices
         """
         processed_data, raw_paths = self.process_workflow_paths(workflow_paths)
-        dictionary, rev_dict = self.create_data_dictionary(
-            processed_data, old_data_dictionary
-        )
+        dictionary, rev_dict = self.create_data_dictionary(processed_data, old_data_dictionary)
+
         num_classes = len(dictionary)
 
         print("Raw paths: %d" % len(raw_paths))
@@ -274,50 +278,26 @@
         random.shuffle(all_unique_paths)
 
         print("Creating dictionaries...")
-        multilabels_paths = self.prepare_paths_labels_dictionary(
-            dictionary, rev_dict, all_unique_paths, compatible_next_tools
-        )
+        multilabels_paths, compatible_tools, d_size = self.prepare_input_target_paths(dictionary, rev_dict, all_unique_paths)
 
-        print("Complete data: %d" % len(multilabels_paths))
-        train_paths_dict, test_paths_dict = self.split_test_train_data(
-            multilabels_paths
-        )
-
-        print("Train data: %d" % len(train_paths_dict))
-        print("Test data: %d" % len(test_paths_dict))
+        print("Complete data: %d" % d_size)
 
         print("Padding train and test data...")
-        # pad training and test data with leading zeros
-        test_data, test_labels = self.pad_paths(
-            test_paths_dict, num_classes, standard_connections, rev_dict
-        )
-        train_data, train_labels = self.pad_paths(
-            train_paths_dict, num_classes, standard_connections, rev_dict
-        )
+        # pad training and test data with trailing zeros
+        train_data, train_labels, test_data, test_labels = self.pad_paths_one_tool_target(multilabels_paths, compatible_tools, d_size, rev_dict, dictionary)
+
+        print("Train data: ", train_data.shape)
+        print("Test data: ", test_data.shape)
 
         print("Estimating sample frequency...")
-        l_tool_freq = self.get_train_last_tool_freq(train_paths_dict, rev_dict)
-        l_tool_tr_samples = self.get_toolid_samples(train_data, l_tool_freq)
+        tr_tool_freq = self.get_train_tool_labels_freq(train_labels, rev_dict)
 
         # Predict tools usage
         print("Predicting tools' usage...")
         usage_pred = predict_tool_usage.ToolPopularity()
-        usage = usage_pred.extract_tool_usage(tool_usage_path, cutoff_date, dictionary)
+        usage = usage_pred.extract_tool_usage(usage_df, cutoff_date, dictionary)
         tool_usage_prediction = usage_pred.get_pupularity_prediction(usage)
         t_pred_usage = self.get_predicted_usage(dictionary, tool_usage_prediction)
-
         # get class weights using the predicted usage for each tool
         class_weights = self.assign_class_weights(num_classes, t_pred_usage)
-
-        return (
-            train_data,
-            train_labels,
-            test_data,
-            test_labels,
-            dictionary,
-            rev_dict,
-            class_weights,
-            t_pred_usage,
-            l_tool_freq,
-            l_tool_tr_samples,
-        )
+        return train_data, train_labels, test_data, test_labels, dictionary, rev_dict, class_weights, compatible_tools, tr_tool_freq
diff -r 4f7e6612906b -r e94dc7945639 test-data/test_tool_usage
--- a/test-data/test_tool_usage	Fri May 06 09:05:18 2022 +0000
+++ b/test-data/test_tool_usage	Sun Oct 16 11:52:10 2022 +0000
@@ -1,93 +1,2001 @@
- toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6                                                                                 	2022-02-01	50054
- upload1                                                                                                                                             	2022-02-01	43169
- toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.3                                                                    	2022-02-01	39139
- Cut1                                                                                                                                                	2022-02-01	29046
- toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0                                                                        	2022-02-01	27481
- toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2                                                                          	2022-02-01	17579
- toolshed.g2.bx.psu.edu/repos/bgruening/align_it/ctb_alignit/1.0.4+galaxy0                                                                           	2022-02-01	15902
- toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0                                                                                     	2022-02-01	14479
- toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1                                                                              	2022-02-01	13513
- toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0                                                                                  	2022-02-01	13197
- toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.10                                                                           	2022-02-01	13176
- toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0                                                                          	2022-02-01	12931
- Filter1                                                                                                                                             	2022-02-01	12490
- __UNZIP_COLLECTION__                                                                                                                                	2022-02-01	12042
- toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0                                                                                    	2022-02-01	11810
- toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2                                                                     	2022-02-01	11502
- toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0                                                              	2022-02-01	11487
- toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2                                                                    	2022-02-01	10705
- toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19                                                                     	2022-02-01	10569
- toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0                                                                    	2022-02-01	10545
- toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0                                                                        	2022-02-01	10543
- toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2                                                                            	2022-02-01	10456
- toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.2                                      	2022-02-01	9307
- toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3                                                                       	2022-02-01	9275
- toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1                                                                                     	2022-02-01	9066
- toolshed.g2.bx.psu.edu/repos/devteam/subtract/gops_subtract_1/1.0.0                                                                                 	2022-02-01	9055
- toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0                                                                                       	2022-02-01	9038
- toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.29.2                                                                         	2022-02-01	9036
- toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1                                                                                     	2022-02-01	9001
- toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2                                                                                           	2022-02-01	7639
- toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10+galaxy1                                                                 	2022-02-01	7325
- toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/1.0.1                                                                                            	2022-02-01	7256
- toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_reheader/0.1.8_1                                                                              	2022-02-01	7238
- toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0                                                                                         	2022-02-01	7178
- toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2                                                                                  	2022-02-01	6751
- __FILTER_FAILED_DATASETS__                                                                                                                          	2022-02-01	6565
- toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1                                                                                      	2022-02-01	6529
- toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy2                                                                    	2022-02-01	6479
- toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0                                                                              	2022-02-01	6397
- toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0                                                                          	2022-02-01	4890
- toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1                                                                                	2022-02-01	4702
- toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0                                                                                         	2022-02-01	4646
- toolshed.g2.bx.psu.edu/repos/iuc/purge_dups/purge_dups/1.2.5+galaxy4                                                                                	2022-02-01	4429
- toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                                           	2022-02-01	4240
- toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.8a                                                                                   	2022-02-01	4099
- toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0                                                                                	2022-02-01	3694
- __DATA_FETCH__                                                                                                                                      	2022-02-01	3686
- toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.24+galaxy0                                                                                     	2022-02-01	3234
- toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2                                                                          	2022-02-01	2936
- toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy0                                                                        	2022-02-01	2814
- toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy0                                                                                        	2022-02-01	2759
- toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy0                                                                                  	2022-02-01	2442
- toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy0                                                                    	2022-02-01	2389
- CONVERTER_gz_to_uncompressed                                                                                                                        	2022-02-01	2340
- Grouping1                                                                                                                                           	2022-02-01	2333
- toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0                                                                              	2022-02-01	2288
- sort1                                                                                                                                               	2022-02-01	1937
- toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                                       	2022-02-01	1837
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- toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0                                                                                              	2022-02-01	1782
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+ __UNZIP_COLLECTION__                                                                                                                                | 2022-09-01 |223.0
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+ interactive_tool_rstudio                                                                                                                            | 2022-09-01 |25.0
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+ __TAG_FROM_FILE__                                                                                                                                   | 2022-09-01 |25.0
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+ interactive_tool_jupyter_notebook                                                                                                                   | 2022-09-01 |22.0
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+ __MERGE_COLLECTION__                                                                                                                                | 2022-09-01 |18.0
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+ CONVERTER_sam_to_bigwig_0                                                                                                                           | 2022-09-01 |13.0
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+ CONVERTER_bedgraph_to_bigwig                                                                                                                        | 2022-09-01 |11.0
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+ __EXPORT_HISTORY__                                                                                                                                  | 2022-09-01 |10.0
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+ bed2gff1                                                                                                                                            | 2022-09-01 |8.0
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+ __RELABEL_FROM_FILE__                                                                                                                               | 2022-09-01 |6.0
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+ __EXPORT_HISTORY_TO_URI__                                                                                                                           | 2022-09-01 |2.0
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+ interactive_tool_simtext_app                                                                                                                        | 2022-09-01 |2.0
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+ tombo_resquiggle                                                                                                                                    | 2020-09-01 |12.0
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+ methtools_calling                                                                                                                                   | 2020-09-01 |12.0
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+ interactive_tool_climate_notebook                                                                                                                   | 2020-09-01 |10.0
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+ hgv_david                                                                                                                                           | 2020-09-01 |9.0
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+ CONVERTER_fasta_to_bowtie_base_index                                                                                                                | 2020-09-01 |4.0
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+ sklearn_generalized_linear                                                                                                                          | 2020-09-01 |2.0
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+ eden_sequence_converter                                                                                                                             | 2020-09-01 |2.0
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+ CONVERTER_bcf_uncompressed_to_bcf                                                                                                                   | 2020-09-01 |1.0
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+ interactive_tool_fairdom_send                                                                                                                       | 2020-09-01 |1.0
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+ interactive_tool_openrefine                                                                                                                         | 2020-09-01 |1.0
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+ toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1021+galaxy1                                                                                       | 2020-09-01 |1.0
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+ CONVERTER_cram_to_bam_0                                                                                                                             | 2020-09-01 |1.0
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+ gff_filter_by_feature_count                                                                                                                         | 2020-09-01 |1.0
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+ toolshed.g2.bx.psu.edu/repos/iuc/kobas/kobas_annotate/0.4                                                                                           | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_info/0.1.8_1                                                                                  | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.1                                                                                  | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/2.3.1+galaxy1                                                      | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.2.0                                                                                 | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.3                                                                      | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/humann2_unpack_pathways/humann2_unpack_pathways/0.11.1.0                                                           | 2020-09-01 |1.0
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+ svm_classifier                                                                                                                                      | 2020-09-01 |1.0
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+ fragmenter                                                                                                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.2                                                                    | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.4                                                                           | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.20.1                                                                                       | 2020-09-01 |1.0
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+ toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.1                                                            | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy1                                                                                        | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/2.5.7.0                                                | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_einfo/ncbi_eutils_einfo/1.2                                                                            | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/heinz/heinz_bum/1.0                                                                                                | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc3+galaxy0                                                                            | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/2.5.7.0                                              | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/earlhaminst/smina/smina/1.0                                                                                            | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileconverter/FileConverter/2.1.0                                                                       | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.2.0                                                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.1.1                                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/0.9                                                            | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.2                                                                            | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1                                                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.3.1                                                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc3+galaxy0                                                              | 2020-09-01 |1.0
+ qual_stats_boxplot                                                                                                                                  | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0                                                                            | 2020-09-01 |1.0
+ interactive_tool_askomics                                                                                                                           | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_scale_data/seurat_scale_data/2.3.1+galaxy1                                                              | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_export_cellbrowser/seurat_export_cellbrowser/2.3.1+galaxy0                                              | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_model_validation/sklearn_model_validation/1.0.8.2                                                    | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.4.3+galaxy9                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_slayer/mothur_chimera_slayer/1.39.5.0                                                               | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_ligand/prepare_ligand/1.5.7+galaxy0                                                    | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_train_test_split/sklearn_train_test_split/1.0.8.2                                                    | 2020-09-01 |1.0
+ tombo_text_output                                                                                                                                   | 2020-09-01 |1.0
+ hgv_linkToGProfile                                                                                                                                  | 2020-09-01 |1.0
+ CONVERTER_wiggle_to_interval_0                                                                                                                      | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/valet/valet/1.0.0                                                                                                  | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/nml/sistr_cmd/sistr_cmd/1.0.2                                                                                          | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/devteam/vcfaddinfo/vcfaddinfo/1.0.0_rc1+galaxy0                                                                        | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.7.0                                                                    | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.0.0                                                                       | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_sequences/get_sequences/0.1.2                                                                  | 2020-09-01 |1.0
+ toolshed.g2.bx.psu.edu/repos/bgruening/rxdock_rbcavity/rxdock_rbcavity/0.1.5                                                                        | 2020-09-01 |1.0
+(51301 rows)||
diff -r 4f7e6612906b -r e94dc7945639 test-data/test_workflow_connections
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_workflow_connections	Sun Oct 16 11:52:10 2022 +0000
@@ -0,0 +1,1101 @@
+ wf_id  | wf_updated |  in_id  |                                                                in_tool                                                                 |                  in_tool_v                   | out_id  |                                                                out_tool                                                                |                  out_tool_v                  | published | deleted | has_errors 
+--------+------------+---------+----------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------+---------+----------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------+-----------+---------+------------||||||||||
+      3 | 2013-02-07 |5.0| Grep1                                                                                                                                  | 1.0.1                                        |7.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | t       | f
+      3 | 2013-02-07 |6.0| Cut1                                                                                                                                   | 1.0.1                                        |8.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      3 | 2013-02-07 |7.0| Remove beginning1                                                                                                                      | 1.0.0                                        |6.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      3 | 2013-02-07 |7.0| Remove beginning1                                                                                                                      | 1.0.0                                        |9.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      3 | 2013-02-07 |8.0| addValue                                                                                                                               | 1.0.0                                        |11.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      3 | 2013-02-07 |9.0| Cut1                                                                                                                                   | 1.0.1                                        |11.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      3 | 2013-02-07 |11.0| Paste1                                                                                                                                 | 1.0.0                                        |10.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      3 | 2013-02-07 |12.0|                                                                                                                                        |                                              |5.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | t       | f
+      4 | 2013-02-07 |13.0| cat1                                                                                                                                   | 1.0.0                                        |22.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |14.0| bedtools_intersectBed                                                                                                                  |                                              |16.0| wc_gnu                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |15.0| bedtools_intersectBed                                                                                                                  |                                              |17.0| sort1                                                                                                                                  | 1.0.1                                        | f         | t       | f
+      4 | 2013-02-07 |16.0| wc_gnu                                                                                                                                 | 1.0.0                                        |18.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |17.0| sort1                                                                                                                                  | 1.0.1                                        |19.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+      4 | 2013-02-07 |18.0| addValue                                                                                                                               | 1.0.0                                        |13.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |19.0| cshl_awk_tool                                                                                                                          |                                              |21.0| cshl_uniq_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |20.0| Count1                                                                                                                                 | 1.0.0                                        |13.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |21.0| cshl_uniq_tool                                                                                                                         | 1.0.0                                        |20.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      4 | 2013-02-07 |23.0|                                                                                                                                        |                                              |14.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+      4 | 2013-02-07 |23.0|                                                                                                                                        |                                              |15.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+      4 | 2013-02-07 |24.0|                                                                                                                                        |                                              |14.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+      4 | 2013-02-07 |24.0|                                                                                                                                        |                                              |15.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+      5 | 2013-02-07 |25.0| addValue                                                                                                                               | 1.0.0                                        |26.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |26.0| cat1                                                                                                                                   | 1.0.0                                        |67.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |27.0| Cut1                                                                                                                                   | 1.0.1                                        |59.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |28.0| Cut1                                                                                                                                   | 1.0.1                                        |59.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |29.0| Cut1                                                                                                                                   | 1.0.1                                        |66.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |30.0| Cut1                                                                                                                                   | 1.0.1                                        |66.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |31.0| Cut1                                                                                                                                   | 1.0.1                                        |36.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |32.0| Cut1                                                                                                                                   | 1.0.1                                        |36.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |33.0| Cut1                                                                                                                                   | 1.0.1                                        |60.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |34.0| Cut1                                                                                                                                   | 1.0.1                                        |60.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |35.0| Paste1                                                                                                                                 | 1.0.0                                        |65.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |36.0| Paste1                                                                                                                                 | 1.0.0                                        |64.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |37.0| addValue                                                                                                                               | 1.0.0                                        |26.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |38.0| addValue                                                                                                                               | 1.0.0                                        |26.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |39.0| Filter1                                                                                                                                | 1.1.0                                        |45.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |39.0| Filter1                                                                                                                                | 1.1.0                                        |46.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |39.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |41.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |42.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |43.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |44.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |41.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        |51.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |41.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        |52.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |42.0| Filter1                                                                                                                                | 1.1.0                                        |49.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |42.0| Filter1                                                                                                                                | 1.1.0                                        |50.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |43.0| Filter1                                                                                                                                | 1.1.0                                        |55.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |43.0| Filter1                                                                                                                                | 1.1.0                                        |56.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |44.0| Filter1                                                                                                                                | 1.1.0                                        |53.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |44.0| Filter1                                                                                                                                | 1.1.0                                        |54.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |45.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |57.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |46.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |58.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |47.0| addValue                                                                                                                               | 1.0.0                                        |26.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |48.0| addValue                                                                                                                               | 1.0.0                                        |26.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |49.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |32.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |50.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |31.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |51.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |34.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |52.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |33.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |53.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |28.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |54.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |27.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |55.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |30.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |56.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |29.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      5 | 2013-02-07 |57.0| Cut1                                                                                                                                   | 1.0.1                                        |35.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |58.0| Cut1                                                                                                                                   | 1.0.1                                        |35.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |59.0| Paste1                                                                                                                                 | 1.0.0                                        |62.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |60.0| Paste1                                                                                                                                 | 1.0.0                                        |63.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |61.0| Add_a_column1                                                                                                                          | 1.1.0                                        |25.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |62.0| Add_a_column1                                                                                                                          | 1.1.0                                        |38.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |63.0| Add_a_column1                                                                                                                          | 1.1.0                                        |37.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |64.0| Add_a_column1                                                                                                                          | 1.1.0                                        |47.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |65.0| Add_a_column1                                                                                                                          | 1.1.0                                        |48.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |66.0| Paste1                                                                                                                                 | 1.0.0                                        |61.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+      5 | 2013-02-07 |68.0|                                                                                                                                        |                                              |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+      5 | 2013-02-07 |69.0|                                                                                                                                        |                                              |40.0| gops_coverage_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+      6 | 2013-02-07 |71.0|                                                                                                                                        |                                              |70.0| cshl_awk_tool1                                                                                                                         | 1.0.0                                        | f         | t       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | t         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | t       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |82.0| Grep1                                                                                                                                  | 1.0.1                                        |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | t         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |83.0| Cut1                                                                                                                                   | 1.0.1                                        |85.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | t         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |83.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | t         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |84.0| Remove beginning1                                                                                                                      | 1.0.0                                        |86.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | t         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |85.0| addValue                                                                                                                               | 1.0.0                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | t         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |86.0| Cut1                                                                                                                                   | 1.0.1                                        |88.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | t         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |88.0| Paste1                                                                                                                                 | 1.0.0                                        |87.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | t         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | t       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+      9 | 2013-02-07 |89.0|                                                                                                                                        |                                              |82.0| Grep1                                                                                                                                  | 1.0.1                                        | f         | f       | f
+     11 | 2013-02-07 |135.0| addValue                                                                                                                               | 1.0.0                                        |136.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |136.0| cat1                                                                                                                                   | 1.0.0                                        |145.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |137.0| Cut1                                                                                                                                   | 1.0.1                                        |170.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |138.0| Cut1                                                                                                                                   | 1.0.1                                        |170.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |139.0| Cut1                                                                                                                                   | 1.0.1                                        |177.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |140.0| Cut1                                                                                                                                   | 1.0.1                                        |177.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |141.0| Cut1                                                                                                                                   | 1.0.1                                        |147.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |142.0| Cut1                                                                                                                                   | 1.0.1                                        |147.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |143.0| Cut1                                                                                                                                   | 1.0.1                                        |171.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |144.0| Cut1                                                                                                                                   | 1.0.1                                        |171.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |146.0| Paste1                                                                                                                                 | 1.0.0                                        |176.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |147.0| Paste1                                                                                                                                 | 1.0.0                                        |175.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |148.0| addValue                                                                                                                               | 1.0.0                                        |136.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |149.0| addValue                                                                                                                               | 1.0.0                                        |136.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |150.0| Filter1                                                                                                                                | 1.1.0                                        |156.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |150.0| Filter1                                                                                                                                | 1.1.0                                        |157.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |150.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |152.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |153.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |154.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        |155.0| Filter1                                                                                                                                | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |152.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        |162.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |152.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        |163.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |153.0| Filter1                                                                                                                                | 1.1.0                                        |160.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |153.0| Filter1                                                                                                                                | 1.1.0                                        |161.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |154.0| Filter1                                                                                                                                | 1.1.0                                        |166.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |154.0| Filter1                                                                                                                                | 1.1.0                                        |167.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |155.0| Filter1                                                                                                                                | 1.1.0                                        |164.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |155.0| Filter1                                                                                                                                | 1.1.0                                        |165.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |156.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |168.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |157.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |169.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |158.0| addValue                                                                                                                               | 1.0.0                                        |136.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |159.0| addValue                                                                                                                               | 1.0.0                                        |136.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |160.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |142.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |161.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |141.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |162.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |144.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |163.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |143.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |164.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |138.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |165.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |137.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |166.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |140.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |167.0| Summary_Statistics1                                                                                                                    | 1.1.0                                        |139.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     11 | 2013-02-07 |168.0| Cut1                                                                                                                                   | 1.0.1                                        |146.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |169.0| Cut1                                                                                                                                   | 1.0.1                                        |146.0| Paste1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |170.0| Paste1                                                                                                                                 | 1.0.0                                        |173.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |171.0| Paste1                                                                                                                                 | 1.0.0                                        |174.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |172.0| Add_a_column1                                                                                                                          | 1.1.0                                        |135.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |173.0| Add_a_column1                                                                                                                          | 1.1.0                                        |149.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |174.0| Add_a_column1                                                                                                                          | 1.1.0                                        |148.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |175.0| Add_a_column1                                                                                                                          | 1.1.0                                        |158.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |176.0| Add_a_column1                                                                                                                          | 1.1.0                                        |159.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |177.0| Paste1                                                                                                                                 | 1.0.0                                        |172.0| Add_a_column1                                                                                                                          | 1.1.0                                        | f         | t       | f
+     11 | 2013-02-07 |178.0|                                                                                                                                        |                                              |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     11 | 2013-02-07 |179.0|                                                                                                                                        |                                              |151.0| gops_coverage_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |180.0| cat1                                                                                                                                   | 1.0.0                                        |189.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |180.0| cat1                                                                                                                                   | 1.0.0                                        |189.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |181.0| bedtools_intersectBed                                                                                                                  |                                              |183.0| wc_gnu                                                                                                                                 | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |181.0| bedtools_intersectBed                                                                                                                  |                                              |183.0| wc_gnu                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |182.0| bedtools_intersectBed                                                                                                                  |                                              |184.0| sort1                                                                                                                                  | 1.0.1                                        | t         | t       | f
+     12 | 2013-02-07 |182.0| bedtools_intersectBed                                                                                                                  |                                              |184.0| sort1                                                                                                                                  | 1.0.1                                        | f         | t       | f
+     12 | 2013-02-07 |183.0| wc_gnu                                                                                                                                 | 1.0.0                                        |185.0| addValue                                                                                                                               | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |183.0| wc_gnu                                                                                                                                 | 1.0.0                                        |185.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |184.0| sort1                                                                                                                                  | 1.0.1                                        |186.0| cshl_awk_tool                                                                                                                          |                                              | t         | t       | f
+     12 | 2013-02-07 |184.0| sort1                                                                                                                                  | 1.0.1                                        |186.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     12 | 2013-02-07 |185.0| addValue                                                                                                                               | 1.0.0                                        |180.0| cat1                                                                                                                                   | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |185.0| addValue                                                                                                                               | 1.0.0                                        |180.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |186.0| cshl_awk_tool                                                                                                                          |                                              |188.0| cshl_uniq_tool                                                                                                                         | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |186.0| cshl_awk_tool                                                                                                                          |                                              |188.0| cshl_uniq_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |187.0| Count1                                                                                                                                 | 1.0.0                                        |180.0| cat1                                                                                                                                   | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |187.0| Count1                                                                                                                                 | 1.0.0                                        |180.0| cat1                                                                                                                                   | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |188.0| cshl_uniq_tool                                                                                                                         | 1.0.0                                        |187.0| Count1                                                                                                                                 | 1.0.0                                        | t         | t       | f
+     12 | 2013-02-07 |188.0| cshl_uniq_tool                                                                                                                         | 1.0.0                                        |187.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     12 | 2013-02-07 |190.0|                                                                                                                                        |                                              |181.0| bedtools_intersectBed                                                                                                                  |                                              | t         | t       | f
+     12 | 2013-02-07 |190.0|                                                                                                                                        |                                              |181.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+     12 | 2013-02-07 |190.0|                                                                                                                                        |                                              |182.0| bedtools_intersectBed                                                                                                                  |                                              | t         | t       | f
+     12 | 2013-02-07 |190.0|                                                                                                                                        |                                              |182.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+     12 | 2013-02-07 |191.0|                                                                                                                                        |                                              |181.0| bedtools_intersectBed                                                                                                                  |                                              | t         | t       | f
+     12 | 2013-02-07 |191.0|                                                                                                                                        |                                              |181.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+     12 | 2013-02-07 |191.0|                                                                                                                                        |                                              |182.0| bedtools_intersectBed                                                                                                                  |                                              | t         | t       | f
+     12 | 2013-02-07 |191.0|                                                                                                                                        |                                              |182.0| bedtools_intersectBed                                                                                                                  |                                              | f         | t       | f
+     19 | 2013-02-14 |193.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |193.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |193.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |193.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |195.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |195.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |195.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |195.0|                                                                                                                                        |                                              |194.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |199.0|                                                                                                                                        |                                              |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |210.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |210.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |210.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |210.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |215.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |215.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |215.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |215.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |200.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |202.0| get_flanks1                                                                                                                            | 1.0.0                                        |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |202.0| get_flanks1                                                                                                                            | 1.0.0                                        |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |202.0| get_flanks1                                                                                                                            | 1.0.0                                        |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |202.0| get_flanks1                                                                                                                            | 1.0.0                                        |201.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |202.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |202.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |202.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |202.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |204.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |204.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |204.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |203.0|                                                                                                                                        |                                              |204.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |206.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |206.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |206.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |205.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |206.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     19 | 2013-02-14 |206.0| cshl_awk_tool                                                                                                                          |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |206.0| cshl_awk_tool                                                                                                                          |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |206.0| cshl_awk_tool                                                                                                                          |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |206.0| cshl_awk_tool                                                                                                                          |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |214.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |214.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |214.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |214.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |207.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |213.0| trap                                                                                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |213.0| trap                                                                                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |213.0| trap                                                                                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |208.0|                                                                                                                                        |                                              |213.0| trap                                                                                                                                   |                                              | f         | t       | f
+     19 | 2013-02-14 |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |211.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |211.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |211.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |211.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |210.0| cshl_awk_tool                                                                                                                          |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |210.0| cshl_awk_tool                                                                                                                          |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |210.0| cshl_awk_tool                                                                                                                          |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |210.0| cshl_awk_tool                                                                                                                          |                                              |209.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     19 | 2013-02-14 |211.0| Show beginning1                                                                                                                        | 1.0.0                                        |212.0| meme_meme                                                                                                                              | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |211.0| Show beginning1                                                                                                                        | 1.0.0                                        |212.0| meme_meme                                                                                                                              | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |211.0| Show beginning1                                                                                                                        | 1.0.0                                        |212.0| meme_meme                                                                                                                              | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |211.0| Show beginning1                                                                                                                        | 1.0.0                                        |212.0| meme_meme                                                                                                                              | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |215.0| Count1                                                                                                                                 | 1.0.0                                        |216.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |215.0| Count1                                                                                                                                 | 1.0.0                                        |216.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |215.0| Count1                                                                                                                                 | 1.0.0                                        |216.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     19 | 2013-02-14 |215.0| Count1                                                                                                                                 | 1.0.0                                        |216.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     28 | 2013-02-14 |242.0|                                                                                                                                        |                                              |243.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | t       | f
+     28 | 2013-02-14 |244.0|                                                                                                                                        |                                              |243.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | t       | f
+     29 | 2013-02-14 |245.0|                                                                                                                                        |                                              |246.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | t       | f
+     29 | 2013-02-14 |247.0|                                                                                                                                        |                                              |246.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | t       | f
+     29 | 2013-02-14 |251.0|                                                                                                                                        |                                              |252.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |251.0|                                                                                                                                        |                                              |257.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |252.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |262.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     29 | 2013-02-14 |252.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |267.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |253.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |252.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |253.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |257.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |254.0| get_flanks1                                                                                                                            | 1.0.0                                        |253.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |255.0|                                                                                                                                        |                                              |254.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |255.0|                                                                                                                                        |                                              |256.0| cshl_grep_tool                                                                                                                         | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |257.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |258.0| cshl_awk_tool                                                                                                                          |                                              | f         | t       | f
+     29 | 2013-02-14 |258.0| cshl_awk_tool                                                                                                                          |                                              |259.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     29 | 2013-02-14 |259.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |266.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |260.0|                                                                                                                                        |                                              |259.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     29 | 2013-02-14 |260.0|                                                                                                                                        |                                              |261.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     29 | 2013-02-14 |260.0|                                                                                                                                        |                                              |265.0| trap                                                                                                                                   |                                              | f         | t       | f
+     29 | 2013-02-14 |261.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |263.0| Show beginning1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |262.0| cshl_awk_tool                                                                                                                          |                                              |261.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     29 | 2013-02-14 |263.0| Show beginning1                                                                                                                        | 1.0.0                                        |264.0| meme_meme                                                                                                                              | 1.0.0                                        | f         | t       | f
+     29 | 2013-02-14 |267.0| Count1                                                                                                                                 | 1.0.0                                        |268.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | t       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |274.0|                                                                                                                                        |                                              |275.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |275.0| addValue                                                                                                                               | 1.0.0                                        |276.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | t       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     31 | 2013-02-18 |276.0| mergeCols1                                                                                                                             | 1.0.1                                        |277.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     33 | 2013-02-16 |283.0|                                                                                                                                        |                                              |284.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     33 | 2013-02-16 |284.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |286.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     33 | 2013-02-16 |285.0|                                                                                                                                        |                                              |284.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     33 | 2013-02-16 |286.0| Count1                                                                                                                                 | 1.0.0                                        |287.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     34 | 2013-02-18 |288.0|                                                                                                                                        |                                              |289.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     36 | 2013-02-18 |293.0|                                                                                                                                        |                                              |292.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     37 | 2013-02-18 |294.0|                                                                                                                                        |                                              |295.0| cshl_sed_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     37 | 2013-02-18 |294.0|                                                                                                                                        |                                              |295.0| cshl_sed_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     37 | 2013-02-18 |294.0|                                                                                                                                        |                                              |295.0| cshl_sed_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     37 | 2013-02-18 |294.0|                                                                                                                                        |                                              |295.0| cshl_sed_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     38 | 2013-02-18 |296.0| gops_intersect_1                                                                                                                       |                                              |297.0| Count1                                                                                                                                 |                                              | f         | t       | 
+     38 | 2013-02-18 |297.0| Count1                                                                                                                                 |                                              |298.0| barchart_gnuplot                                                                                                                       |                                              | f         | t       | 
+     39 | 2013-02-18 |301.0| gops_intersect_1                                                                                                                       |                                              |302.0| Count1                                                                                                                                 |                                              | f         | t       | 
+     39 | 2013-02-18 |302.0| Count1                                                                                                                                 |                                              |303.0| barchart_gnuplot                                                                                                                       |                                              | f         | t       | 
+     41 | 2013-02-18 |309.0|                                                                                                                                        |                                              |310.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     41 | 2013-02-18 |310.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |312.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     41 | 2013-02-18 |311.0|                                                                                                                                        |                                              |310.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     41 | 2013-02-18 |312.0| Count1                                                                                                                                 | 1.0.0                                        |313.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     51 | 2013-02-18 |344.0| Count1                                                                                                                                 |                                              |345.0| barchart_gnuplot                                                                                                                       |                                              | f         | f       | 
+     62 | 2013-02-18 |395.0|                                                                                                                                        |                                              |396.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     62 | 2013-02-18 |396.0| Count1                                                                                                                                 | 1.0.0                                        |397.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     64 | 2013-02-18 |401.0|                                                                                                                                        |                                              |402.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     64 | 2013-02-18 |402.0| Count1                                                                                                                                 | 1.0.0                                        |403.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     66 | 2013-02-18 |407.0|                                                                                                                                        |                                              |408.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     66 | 2013-02-18 |408.0| Count1                                                                                                                                 | 1.0.0                                        |409.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     68 | 2013-02-18 |413.0|                                                                                                                                        |                                              |414.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     68 | 2013-02-18 |414.0| Count1                                                                                                                                 | 1.0.0                                        |415.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     69 | 2013-02-18 |416.0|                                                                                                                                        |                                              |417.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     69 | 2013-02-18 |417.0| Count1                                                                                                                                 | 1.0.0                                        |418.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     70 | 2013-02-18 |419.0|                                                                                                                                        |                                              |420.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     70 | 2013-02-18 |420.0| Count1                                                                                                                                 | 1.0.0                                        |421.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     72 | 2013-02-18 |425.0|                                                                                                                                        |                                              |426.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     72 | 2013-02-18 |426.0| Count1                                                                                                                                 | 1.0.0                                        |427.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     73 | 2013-02-18 |428.0|                                                                                                                                        |                                              |429.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     73 | 2013-02-18 |429.0| Count1                                                                                                                                 | 1.0.0                                        |430.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     74 | 2013-02-18 |431.0|                                                                                                                                        |                                              |432.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     74 | 2013-02-18 |432.0| Count1                                                                                                                                 | 1.0.0                                        |433.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     75 | 2013-02-18 |436.0| Count1                                                                                                                                 |                                              |437.0| barchart_gnuplot                                                                                                                       |                                              | f         | f       | 
+     76 | 2013-02-18 |438.0|                                                                                                                                        |                                              |439.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     76 | 2013-02-18 |439.0| Count1                                                                                                                                 | 1.0.0                                        |440.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     77 | 2013-02-18 |442.0|                                                                                                                                        |                                              |443.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     77 | 2013-02-18 |443.0| Count1                                                                                                                                 | 1.0.0                                        |444.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     78 | 2013-02-18 |445.0|                                                                                                                                        |                                              |446.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     78 | 2013-02-18 |446.0| Count1                                                                                                                                 | 1.0.0                                        |447.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     80 | 2013-02-18 |462.0|                                                                                                                                        |                                              |463.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     80 | 2013-02-18 |463.0| Count1                                                                                                                                 | 1.0.0                                        |464.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | t       | f
+     81 | 2013-02-18 |465.0|                                                                                                                                        |                                              |466.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     81 | 2013-02-18 |466.0| addValue                                                                                                                               | 1.0.0                                        |467.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     81 | 2013-02-18 |467.0| mergeCols1                                                                                                                             | 1.0.1                                        |468.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     81 | 2013-02-18 |468.0| Cut1                                                                                                                                   | 1.0.1                                        |469.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | f       | f
+     81 | 2013-02-18 |469.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |470.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        | f         | f       | f
+     81 | 2013-02-18 |472.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |473.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     81 | 2013-02-18 |473.0| Count1                                                                                                                                 | 1.0.0                                        |474.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |475.0|                                                                                                                                        |                                              |476.0| CONVERTER_interval_to_bedstrict_0                                                                                                      | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |476.0| CONVERTER_interval_to_bedstrict_0                                                                                                      | 1.0.0                                        |477.0| addValue                                                                                                                               | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |477.0| addValue                                                                                                                               | 1.0.0                                        |478.0| mergeCols1                                                                                                                             | 1.0.1                                        | f         | f       | f
+     82 | 2013-02-18 |478.0| mergeCols1                                                                                                                             | 1.0.1                                        |479.0| Cut1                                                                                                                                   | 1.0.1                                        | f         | f       | f
+     82 | 2013-02-18 |481.0|                                                                                                                                        |                                              |482.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |482.0| get_flanks1                                                                                                                            | 1.0.0                                        |483.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |483.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |487.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |484.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |483.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |484.0| cshl_find_and_replace                                                                                                                  | 1.0.0                                        |485.0| CONVERTER_interval_to_bed_0                                                                                                            | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |485.0| CONVERTER_interval_to_bed_0                                                                                                            | 1.0.0                                        |486.0| CONVERTER_interval_to_bedstrict_0                                                                                                      | 1.0.0                                        | f         | f       | f
+     82 | 2013-02-18 |487.0| Count1                                                                                                                                 | 1.0.0                                        |488.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     83 | 2013-02-18 |489.0|                                                                                                                                        |                                              |490.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     83 | 2013-02-18 |490.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |492.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     83 | 2013-02-18 |491.0|                                                                                                                                        |                                              |490.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     83 | 2013-02-18 |492.0| Count1                                                                                                                                 | 1.0.0                                        |493.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     84 | 2013-02-19 |495.0| gops_intersect_1                                                                                                                       |                                              |496.0| Count1                                                                                                                                 |                                              | f         | f       | 
+     84 | 2013-02-19 |496.0| Count1                                                                                                                                 |                                              |497.0| barchart_gnuplot                                                                                                                       |                                              | f         | f       | 
+     86 | 2013-02-19 |504.0|                                                                                                                                        |                                              |505.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     86 | 2013-02-19 |505.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |507.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     86 | 2013-02-19 |506.0|                                                                                                                                        |                                              |505.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     86 | 2013-02-19 |507.0| Count1                                                                                                                                 | 1.0.0                                        |508.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     95 | 2013-02-20 |671.0|                                                                                                                                        |                                              |672.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     95 | 2013-02-20 |672.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |674.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     95 | 2013-02-20 |673.0|                                                                                                                                        |                                              |672.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     95 | 2013-02-20 |674.0| Count1                                                                                                                                 | 1.0.0                                        |675.0| barchart_gnuplot                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | t       | f
+     97 | 2013-02-20 |700.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | t         | t       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | f       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | f         | t       | f
+     97 | 2013-02-20 |702.0|                                                                                                                                        |                                              |701.0| toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   | 1.4.1                                        | t         | t       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |703.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | t         | t       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        |722.0| Count1                                                                                                                                 | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |704.0| gops_subtract_1                                                                                                                        | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |706.0| get_flanks1                                                                                                                            | 1.0.0                                        |705.0| cshl_awk_tool                                                                                                                          | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |707.0|                                                                                                                                        |                                              |706.0| get_flanks1                                                                                                                            | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | t         | t       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | f       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | f         | t       | f
+     97 | 2013-02-20 |708.0| gops_intersect_1                                                                                                                       | 1.0.0                                        |720.0| Count1                                                                                                                                 | 1.0.0                                        | t         | t       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | t       | f
+     97 | 2013-02-20 |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |716.0| fasta2tab                                                                                                                              | 1.1.0                                        | t         | t       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
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+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
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+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
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+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |709.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | t         | t       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | f       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | f         | t       | f
+     97 | 2013-02-20 |710.0|                                                                                                                                        |                                              |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        | t         | t       | f
+     97 | 2013-02-20 |711.0| Extract genomic DNA 1                                                                                                                  | 2.2.2                                        |712.0| fasta2tab                                                                                                                              | 1.1.0                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419625.0| Grep1                                                                                                                                  | 1.0.1                                        |2419627.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3                                                      | 1.1.3                                        | f         | f       | f
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+ 157072 | 2022-08-08 |2419628.0| toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.22.0.1                                                                          | 3.22.0.1                                     |2419631.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3                                                      | 1.1.3                                        | f         | f       | f
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+ 157072 | 2022-08-08 |2419648.0|                                                                                                                                        |                                              |2419623.0| toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy4                                                               | 1.6.10.43+galaxy4                            | f         | f       | f
+ 157072 | 2022-08-08 |2419649.0|                                                                                                                                        |                                              |2419623.0| toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy4                                                               | 1.6.10.43+galaxy4                            | f         | f       | f
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+ 157072 | 2022-08-08 |2419651.0|                                                                                                                                        |                                              |2419628.0| toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.22.0.1                                                                          | 3.22.0.1                                     | f         | f       | f
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+ 157072 | 2022-08-08 |2419632.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3                                                      | 1.1.3                                        |2419640.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419632.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3                                                      | 1.1.3                                        |2419641.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419633.0| Filter1                                                                                                                                | 1.1.1                                        |2419634.0| Filter1                                                                                                                                | 1.1.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419633.0| Filter1                                                                                                                                | 1.1.1                                        |2419635.0| Filter1                                                                                                                                | 1.1.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419634.0| Filter1                                                                                                                                | 1.1.1                                        |2419636.0| Filter1                                                                                                                                | 1.1.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419635.0| Filter1                                                                                                                                | 1.1.1                                        |2419637.0| Filter1                                                                                                                                | 1.1.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419636.0| Filter1                                                                                                                                | 1.1.1                                        |2419638.0| Cut1                                                                                                                                   | 1.0.2                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419637.0| Filter1                                                                                                                                | 1.1.1                                        |2419639.0| Cut1                                                                                                                                   | 1.0.2                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419638.0| Cut1                                                                                                                                   | 1.0.2                                        |2419640.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419639.0| Cut1                                                                                                                                   | 1.0.2                                        |2419641.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419640.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        |2419642.0| toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.0.1                                                               | 3.0.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419640.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        |2419643.0| toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2                                                              | 0.2                                          | f         | f       | f
+ 157072 | 2022-08-08 |2419641.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        |2419644.0| toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.0.1                                                               | 3.0.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419641.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                          | 1.1.2                                        |2419645.0| toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2                                                              | 0.2                                          | f         | f       | f
+ 157072 | 2022-08-08 |2419643.0| toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2                                                              | 0.2                                          |2419646.0| toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.1                                                                  | 1.1.1                                        | f         | f       | f
+ 157072 | 2022-08-08 |2419645.0| toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2                                                              | 0.2                                          |2419647.0| toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.1                                                                  | 1.1.1                                        | f         | f       | f
+ 157073 | 2022-08-08 |2419652.0| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0                                                                            | 0.20.1+galaxy0                               |2419653.0| toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                              | 0.7.17.1                                     | f         | f       | f
+ 157073 | 2022-08-08 |2419652.0| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0                                                                            | 0.20.1+galaxy0                               |2419658.0| toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                           | 1.9+galaxy1                                  | f         | f       | f
+ 157073 | 2022-08-08 |2419653.0| toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                              | 0.7.17.1                                     |2419654.0| toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2                                                               | 1.9+galaxy2                                  | f         | f       | f
+ 157073 | 2022-08-08 |2419654.0| toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2                                                               | 1.9+galaxy2                                  |2419655.0| toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2                                                       | 2.0.2+galaxy2                                | f         | f       | f
+ 157073 | 2022-08-08 |2419654.0| toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2                                                               | 1.9+galaxy2                                  |2419656.0| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2                                                             | 2.18.2.2                                     | f         | f       | f
+ 157073 | 2022-08-08 |2419655.0| toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2                                                       | 2.0.2+galaxy2                                |2419658.0| toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                           | 1.9+galaxy1                                  | f         | f       | f
+ 157073 | 2022-08-08 |2419656.0| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2                                                             | 2.18.2.2                                     |2419657.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0                                                           | 2.1.5+galaxy0                                | f         | f       | f
+ 157073 | 2022-08-08 |2419656.0| toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2                                                             | 2.18.2.2                                     |2419658.0| toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                           | 1.9+galaxy1                                  | f         | f       | f
+ 157073 | 2022-08-08 |2419657.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0                                                           | 2.1.5+galaxy0                                |2419659.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0                                                       | 2.1.5+galaxy0                                | f         | f       | f
+ 157073 | 2022-08-08 |2419659.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0                                                       | 2.1.5+galaxy0                                |2419660.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0                                                                 | 2.1.5+galaxy0                                | f         | f       | f
+ 157073 | 2022-08-08 |2419660.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0                                                                 | 2.1.5+galaxy0                                |2419661.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0                                                             | 2.1.5+galaxy0                                | f         | f       | f
+ 157073 | 2022-08-08 |2419661.0| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0                                                             | 2.1.5+galaxy0                                |2419662.0| toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19                                                        | 4.5covid19                                   | f         | f       | f
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+ 157074 | 2022-08-08 |2419665.0| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1                                                                 | 3.3.10.1                                     |2419666.0| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3                                                            | 1.16.36.3                                    | f         | f       | f
+ 157074 | 2022-08-08 |2419666.0| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3                                                            | 1.16.36.3                                    |2419667.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        | f         | f       | f
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+ 157074 | 2022-08-08 |2419666.0| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3                                                            | 1.16.36.3                                    |2419671.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419667.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        |2419668.0| toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0                                                                             | 4.3.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419667.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        |2419669.0| toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0                                                                             | 4.3.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419668.0| toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0                                                                             | 4.3.0                                        |2419670.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419668.0| toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0                                                                             | 4.3.0                                        |2419670.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419669.0| toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0                                                                             | 4.3.0                                        |2419671.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419670.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        |2419672.0| toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0                                                             | 2.0.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419670.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        |2419673.0| toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0                                                             | 2.0.0                                        | f         | f       | f
+ 157074 | 2022-08-08 |2419670.0| toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0                                                                     | 3.0.0                                        |2419674.0| toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0                                                             | 2.0.0                                        | f         | f       | f
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+ 157075 | 2022-08-08 |2419678.0| toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-2                                                                           | 2.6.0b-2                                     |2419679.0| toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1                                                                     | 2.1.7+galaxy1                                | f         | f       | f
+ 157075 | 2022-08-08 |2419679.0| toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1                                                                     | 2.1.7+galaxy1                                |2419680.0| sort1                                                                                                                                  | 1.2.0                                        | f         | f       | f
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+ 157076 | 2022-08-08 |2419683.0| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0                                                                            | 0.20.1+galaxy0                               |2419685.0| toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                              | 0.7.17.1                                     | f         | f       | f
+ 157076 | 2022-08-08 |2419683.0| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0                                                                            | 0.20.1+galaxy0                               |2419693.0| toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                           | 1.9+galaxy1                                  | f         | f       | f
+ 157076 | 2022-08-08 |2419684.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1                                                               | 1.1.1                                        |2419685.0| toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                              | 0.7.17.1                                     | f         | f       | f
+ 157076 | 2022-08-08 |2419685.0| toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                              | 0.7.17.1                                     |2419686.0| toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2                                                       | 2.0.2+galaxy2                                | f         | f       | f
+ 157076 | 2022-08-08 |2419685.0| toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                              | 0.7.17.1                                     |2419687.0| toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy3                                                               | 1.9+galaxy3                                  | f         | f       | f
+ 157076 | 2022-08-08 |2419686.0| toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2                                                       | 2.0.2+galaxy2                                |2419693.0| toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                           | 1.9+galaxy1                                  | f         | f       | f
+ 157076 | 2022-08-08 |2419687.0| toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy3                                                               | 1.9+galaxy3                                  |2419688.0| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3                                                          | 2.2.2d+galaxy3                               | f         | f       | f
+ 157076 | 2022-08-08 |2419687.0| toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy3                                                               | 1.9+galaxy3                                  |2419689.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2                                                                     | 1.3.1+galaxy2                                | f         | f       | f
+ 157076 | 2022-08-08 |2419688.0| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3                                                          | 2.2.2d+galaxy3                               |2419690.0| __FLATTEN__                                                                                                                            | 1.0.0                                        | f         | f       | f
+ 157076 | 2022-08-08 |2419689.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2                                                                     | 1.3.1+galaxy2                                |2419691.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2                                                             | 1.3.1+galaxy2                                | f         | f       | f
+ 157076 | 2022-08-08 |2419689.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2                                                                     | 1.3.1+galaxy2                                |2419692.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0                                                           | 1.3.1+galaxy0                                | f         | f       | f
+ 157076 | 2022-08-08 |2419690.0| __FLATTEN__                                                                                                                            | 1.0.0                                        |2419693.0| toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                           | 1.9+galaxy1                                  | f         | f       | f
+ 157076 | 2022-08-08 |2419691.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2                                                             | 1.3.1+galaxy2                                |2419694.0| toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19                                                        | 4.5covid19                                   | f         | f       | f
+ 157076 | 2022-08-08 |2419692.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0                                                           | 1.3.1+galaxy0                                |2419695.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1                                                               | 1.1.1                                        | f         | f       | f
+ 157076 | 2022-08-08 |2419695.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1                                                               | 1.1.1                                        |2419696.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1                                                                    | 0.1.1                                        | f         | f       | f
+ 157076 | 2022-08-08 |2419696.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1                                                                    | 0.1.1                                        |2419697.0| toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.14+galaxy0                                                                      | 3.1.14+galaxy0                               | f         | f       | f
+ 157076 | 2022-08-08 |2419696.0| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1                                                                    | 0.1.1                                        |2419698.0| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.1+galaxy0                                                                     | 1.4.1+galaxy0                                | f         | f       | f
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+ 157076 | 2022-08-08 |2419700.0|                                                                                                                                        |                                              |2419691.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2                                                             | 1.3.1+galaxy2                                | f         | f       | f
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+ 157076 | 2022-08-08 |2419702.0|                                                                                                                                        |                                              |2419691.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2                                                             | 1.3.1+galaxy2                                | f         | f       | f
+ 157076 | 2022-08-08 |2419702.0|                                                                                                                                        |                                              |2419692.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0                                                           | 1.3.1+galaxy0                                | f         | f       | f
+ 157076 | 2022-08-08 |2419703.0|                                                                                                                                        |                                              |2419691.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2                                                             | 1.3.1+galaxy2                                | f         | f       | f
+ 157076 | 2022-08-08 |2419703.0|                                                                                                                                        |                                              |2419692.0| toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0                                                           | 1.3.1+galaxy0                                | f         | f       | f
+ 157077 | 2022-08-08 |2419704.0|                                                                                                                                        |                                              |2419707.0| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0                                                                           | 0.4.6.0                                      | f         | f       | f
+ 157077 | 2022-08-08 |2419704.0|                                                                                                                                        |                                              |2419708.0| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                          | 3.12.0+galaxy1                               | f         | f       | f
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+ 157077 | 2022-08-08 |2419705.0|                                                                                                                                        |                                              |2419708.0| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                          | 3.12.0+galaxy1                               | f         | f       | f
+ 157077 | 2022-08-08 |2419706.0|                                                                                                                                        |                                              |2419707.0| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0                                                                           | 0.4.6.0                                      | f         | f       | f
+ 157077 | 2022-08-08 |2419706.0|                                                                                                                                        |                                              |2419708.0| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                          | 3.12.0+galaxy1                               | f         | f       | f
+ 157077 | 2022-08-08 |2419707.0| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0                                                                           | 0.4.6.0                                      |2419709.0| toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy1                                                                    | 0.8.1+galaxy1                                | f         | f       | f
+ 157077 | 2022-08-08 |2419707.0| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0                                                                           | 0.4.6.0                                      |2419710.0| toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2                                                                   | 0.8.1+galaxy2                                | f         | f       | f
+ 157077 | 2022-08-08 |2419708.0| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                          | 3.12.0+galaxy1                               |2419711.0| toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2                                                                   | 0.8.1+galaxy2                                | f         | f       | f
+ 157077 | 2022-08-08 |2419708.0| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                          | 3.12.0+galaxy1                               |2419712.0| toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy1                                                                    | 0.8.1+galaxy1                                | f         | f       | f
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diff -r 4f7e6612906b -r e94dc7945639 test-data/test_workflows
--- a/test-data/test_workflows	Fri May 06 09:05:18 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,499 +0,0 @@
-3	2013-02-07	7	 Remove beginning1                                                                                                                      	 1.0.0                                        	6	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-3	2013-02-07	7	 Remove beginning1                                                                                                                      	 1.0.0                                        	9	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-3	2013-02-07	8	 addValue                                                                                                                               	 1.0.0                                        	11	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-3	2013-02-07	9	 Cut1                                                                                                                                   	 1.0.1                                        	11	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-3	2013-02-07	11	 Paste1                                                                                                                                 	 1.0.0                                        	10	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-3	2013-02-07	12	                                                                                                                                        	                                              	5	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 t       	 f
-4	2013-02-07	13	 cat1                                                                                                                                   	 1.0.0                                        	22	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	14	 bedtools_intersectBed                                                                                                                  	                                              	16	 wc_gnu                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	15	 bedtools_intersectBed                                                                                                                  	                                              	17	 sort1                                                                                                                                  	 1.0.1                                        	 f         	 t       	 f
-4	2013-02-07	16	 wc_gnu                                                                                                                                 	 1.0.0                                        	18	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	17	 sort1                                                                                                                                  	 1.0.1                                        	19	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-4	2013-02-07	18	 addValue                                                                                                                               	 1.0.0                                        	13	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	19	 cshl_awk_tool                                                                                                                          	                                              	21	 cshl_uniq_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	20	 Count1                                                                                                                                 	 1.0.0                                        	13	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	21	 cshl_uniq_tool                                                                                                                         	 1.0.0                                        	20	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-4	2013-02-07	23	                                                                                                                                        	                                              	14	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-4	2013-02-07	23	                                                                                                                                        	                                              	15	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-4	2013-02-07	24	                                                                                                                                        	                                              	14	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-4	2013-02-07	24	                                                                                                                                        	                                              	15	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-5	2013-02-07	25	 addValue                                                                                                                               	 1.0.0                                        	26	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	26	 cat1                                                                                                                                   	 1.0.0                                        	67	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	27	 Cut1                                                                                                                                   	 1.0.1                                        	59	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	28	 Cut1                                                                                                                                   	 1.0.1                                        	59	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	29	 Cut1                                                                                                                                   	 1.0.1                                        	66	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	30	 Cut1                                                                                                                                   	 1.0.1                                        	66	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	31	 Cut1                                                                                                                                   	 1.0.1                                        	36	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	32	 Cut1                                                                                                                                   	 1.0.1                                        	36	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	33	 Cut1                                                                                                                                   	 1.0.1                                        	60	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	34	 Cut1                                                                                                                                   	 1.0.1                                        	60	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	35	 Paste1                                                                                                                                 	 1.0.0                                        	65	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	36	 Paste1                                                                                                                                 	 1.0.0                                        	64	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	37	 addValue                                                                                                                               	 1.0.0                                        	26	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	38	 addValue                                                                                                                               	 1.0.0                                        	26	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	39	 Filter1                                                                                                                                	 1.1.0                                        	45	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	39	 Filter1                                                                                                                                	 1.1.0                                        	46	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	39	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	41	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	42	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	43	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	44	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	41	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	51	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	41	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	52	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	42	 Filter1                                                                                                                                	 1.1.0                                        	49	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	42	 Filter1                                                                                                                                	 1.1.0                                        	50	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	43	 Filter1                                                                                                                                	 1.1.0                                        	55	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	43	 Filter1                                                                                                                                	 1.1.0                                        	56	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	44	 Filter1                                                                                                                                	 1.1.0                                        	53	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	44	 Filter1                                                                                                                                	 1.1.0                                        	54	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	45	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	57	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	46	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	58	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	47	 addValue                                                                                                                               	 1.0.0                                        	26	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	48	 addValue                                                                                                                               	 1.0.0                                        	26	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	49	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	32	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	50	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	31	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	51	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	34	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	52	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	33	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	53	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	28	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	54	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	27	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	55	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	30	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	56	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	29	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-5	2013-02-07	57	 Cut1                                                                                                                                   	 1.0.1                                        	35	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	58	 Cut1                                                                                                                                   	 1.0.1                                        	35	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	59	 Paste1                                                                                                                                 	 1.0.0                                        	62	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	60	 Paste1                                                                                                                                 	 1.0.0                                        	63	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	61	 Add_a_column1                                                                                                                          	 1.1.0                                        	25	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	62	 Add_a_column1                                                                                                                          	 1.1.0                                        	38	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	63	 Add_a_column1                                                                                                                          	 1.1.0                                        	37	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	64	 Add_a_column1                                                                                                                          	 1.1.0                                        	47	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	65	 Add_a_column1                                                                                                                          	 1.1.0                                        	48	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	66	 Paste1                                                                                                                                 	 1.0.0                                        	61	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-5	2013-02-07	68	                                                                                                                                        	                                              	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-5	2013-02-07	69	                                                                                                                                        	                                              	40	 gops_coverage_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-6	2013-02-07	71	                                                                                                                                        	                                              	70	 cshl_awk_tool1                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 t         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 t         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 t         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 t         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 t         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 t         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 t         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 t         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 t       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 t       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	82	 Grep1                                                                                                                                  	 1.0.1                                        	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	83	 Cut1                                                                                                                                   	 1.0.1                                        	85	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	83	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	84	 Remove beginning1                                                                                                                      	 1.0.0                                        	86	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-9	2013-02-07	85	 addValue                                                                                                                               	 1.0.0                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	86	 Cut1                                                                                                                                   	 1.0.1                                        	88	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	88	 Paste1                                                                                                                                 	 1.0.0                                        	87	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-9	2013-02-07	89	                                                                                                                                        	                                              	82	 Grep1                                                                                                                                  	 1.0.1                                        	 f         	 f       	 f
-11	2013-02-07	135	 addValue                                                                                                                               	 1.0.0                                        	136	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	136	 cat1                                                                                                                                   	 1.0.0                                        	145	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	137	 Cut1                                                                                                                                   	 1.0.1                                        	170	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	138	 Cut1                                                                                                                                   	 1.0.1                                        	170	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	139	 Cut1                                                                                                                                   	 1.0.1                                        	177	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	140	 Cut1                                                                                                                                   	 1.0.1                                        	177	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	141	 Cut1                                                                                                                                   	 1.0.1                                        	147	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	142	 Cut1                                                                                                                                   	 1.0.1                                        	147	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	143	 Cut1                                                                                                                                   	 1.0.1                                        	171	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	144	 Cut1                                                                                                                                   	 1.0.1                                        	171	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	146	 Paste1                                                                                                                                 	 1.0.0                                        	176	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	147	 Paste1                                                                                                                                 	 1.0.0                                        	175	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	148	 addValue                                                                                                                               	 1.0.0                                        	136	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	149	 addValue                                                                                                                               	 1.0.0                                        	136	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	150	 Filter1                                                                                                                                	 1.1.0                                        	156	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	150	 Filter1                                                                                                                                	 1.1.0                                        	157	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	150	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	152	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	153	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	154	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	155	 Filter1                                                                                                                                	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	152	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	162	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	152	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	163	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	153	 Filter1                                                                                                                                	 1.1.0                                        	160	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	153	 Filter1                                                                                                                                	 1.1.0                                        	161	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	154	 Filter1                                                                                                                                	 1.1.0                                        	166	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	154	 Filter1                                                                                                                                	 1.1.0                                        	167	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	155	 Filter1                                                                                                                                	 1.1.0                                        	164	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	155	 Filter1                                                                                                                                	 1.1.0                                        	165	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	156	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	168	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	157	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	169	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	158	 addValue                                                                                                                               	 1.0.0                                        	136	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	159	 addValue                                                                                                                               	 1.0.0                                        	136	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	160	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	142	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	161	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	141	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	162	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	144	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	163	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	143	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	164	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	138	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	165	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	137	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	166	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	140	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	167	 Summary_Statistics1                                                                                                                    	 1.1.0                                        	139	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-11	2013-02-07	168	 Cut1                                                                                                                                   	 1.0.1                                        	146	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	169	 Cut1                                                                                                                                   	 1.0.1                                        	146	 Paste1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	170	 Paste1                                                                                                                                 	 1.0.0                                        	173	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	171	 Paste1                                                                                                                                 	 1.0.0                                        	174	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	172	 Add_a_column1                                                                                                                          	 1.1.0                                        	135	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	173	 Add_a_column1                                                                                                                          	 1.1.0                                        	149	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	174	 Add_a_column1                                                                                                                          	 1.1.0                                        	148	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	175	 Add_a_column1                                                                                                                          	 1.1.0                                        	158	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	176	 Add_a_column1                                                                                                                          	 1.1.0                                        	159	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	177	 Paste1                                                                                                                                 	 1.0.0                                        	172	 Add_a_column1                                                                                                                          	 1.1.0                                        	 f         	 t       	 f
-11	2013-02-07	178	                                                                                                                                        	                                              	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-11	2013-02-07	179	                                                                                                                                        	                                              	151	 gops_coverage_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	180	 cat1                                                                                                                                   	 1.0.0                                        	189	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	181	 bedtools_intersectBed                                                                                                                  	                                              	183	 wc_gnu                                                                                                                                 	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	182	 bedtools_intersectBed                                                                                                                  	                                              	184	 sort1                                                                                                                                  	 1.0.1                                        	 t         	 t       	 f
-12	2013-02-07	183	 wc_gnu                                                                                                                                 	 1.0.0                                        	185	 addValue                                                                                                                               	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	184	 sort1                                                                                                                                  	 1.0.1                                        	186	 cshl_awk_tool                                                                                                                          	                                              	 t         	 t       	 f
-12	2013-02-07	185	 addValue                                                                                                                               	 1.0.0                                        	180	 cat1                                                                                                                                   	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	186	 cshl_awk_tool                                                                                                                          	                                              	188	 cshl_uniq_tool                                                                                                                         	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	187	 Count1                                                                                                                                 	 1.0.0                                        	180	 cat1                                                                                                                                   	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	188	 cshl_uniq_tool                                                                                                                         	 1.0.0                                        	187	 Count1                                                                                                                                 	 1.0.0                                        	 t         	 t       	 f
-12	2013-02-07	190	                                                                                                                                        	                                              	181	 bedtools_intersectBed                                                                                                                  	                                              	 t         	 t       	 f
-12	2013-02-07	190	                                                                                                                                        	                                              	182	 bedtools_intersectBed                                                                                                                  	                                              	 t         	 t       	 f
-12	2013-02-07	191	                                                                                                                                        	                                              	181	 bedtools_intersectBed                                                                                                                  	                                              	 t         	 t       	 f
-12	2013-02-07	191	                                                                                                                                        	                                              	182	 bedtools_intersectBed                                                                                                                  	                                              	 t         	 t       	 f
-12	2013-02-07	180	 cat1                                                                                                                                   	 1.0.0                                        	189	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	181	 bedtools_intersectBed                                                                                                                  	                                              	183	 wc_gnu                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	182	 bedtools_intersectBed                                                                                                                  	                                              	184	 sort1                                                                                                                                  	 1.0.1                                        	 f         	 t       	 f
-12	2013-02-07	183	 wc_gnu                                                                                                                                 	 1.0.0                                        	185	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	184	 sort1                                                                                                                                  	 1.0.1                                        	186	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-12	2013-02-07	185	 addValue                                                                                                                               	 1.0.0                                        	180	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	186	 cshl_awk_tool                                                                                                                          	                                              	188	 cshl_uniq_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	187	 Count1                                                                                                                                 	 1.0.0                                        	180	 cat1                                                                                                                                   	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	188	 cshl_uniq_tool                                                                                                                         	 1.0.0                                        	187	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-12	2013-02-07	190	                                                                                                                                        	                                              	181	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-12	2013-02-07	190	                                                                                                                                        	                                              	182	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-12	2013-02-07	191	                                                                                                                                        	                                              	181	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-12	2013-02-07	191	                                                                                                                                        	                                              	182	 bedtools_intersectBed                                                                                                                  	                                              	 f         	 t       	 f
-19	2013-02-14	193	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	195	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	210	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	215	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	202	 get_flanks1                                                                                                                            	 1.0.0                                        	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	202	 get_flanks1                                                                                                                            	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	204	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	206	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	206	 cshl_awk_tool                                                                                                                          	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	214	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	213	 trap                                                                                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	211	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	210	 cshl_awk_tool                                                                                                                          	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	211	 Show beginning1                                                                                                                        	 1.0.0                                        	212	 meme_meme                                                                                                                              	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	215	 Count1                                                                                                                                 	 1.0.0                                        	216	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	193	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	195	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	210	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	215	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	202	 get_flanks1                                                                                                                            	 1.0.0                                        	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	202	 get_flanks1                                                                                                                            	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	204	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	206	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	206	 cshl_awk_tool                                                                                                                          	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	214	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	213	 trap                                                                                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	211	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	210	 cshl_awk_tool                                                                                                                          	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	211	 Show beginning1                                                                                                                        	 1.0.0                                        	212	 meme_meme                                                                                                                              	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	215	 Count1                                                                                                                                 	 1.0.0                                        	216	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	193	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	195	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	210	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	215	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	202	 get_flanks1                                                                                                                            	 1.0.0                                        	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	202	 get_flanks1                                                                                                                            	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	204	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	206	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	206	 cshl_awk_tool                                                                                                                          	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	214	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	213	 trap                                                                                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	211	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	210	 cshl_awk_tool                                                                                                                          	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	211	 Show beginning1                                                                                                                        	 1.0.0                                        	212	 meme_meme                                                                                                                              	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	215	 Count1                                                                                                                                 	 1.0.0                                        	216	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	193	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	195	                                                                                                                                        	                                              	194	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	199	                                                                                                                                        	                                              	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	210	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	215	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	200	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	202	 get_flanks1                                                                                                                            	 1.0.0                                        	201	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	202	 get_flanks1                                                                                                                            	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	203	                                                                                                                                        	                                              	204	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	205	 gops_subtract_1                                                                                                                        	 1.0.0                                        	206	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-19	2013-02-14	206	 cshl_awk_tool                                                                                                                          	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	214	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	207	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	208	                                                                                                                                        	                                              	213	 trap                                                                                                                                   	                                              	 f         	 t       	 f
-19	2013-02-14	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	211	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	210	 cshl_awk_tool                                                                                                                          	                                              	209	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-19	2013-02-14	211	 Show beginning1                                                                                                                        	 1.0.0                                        	212	 meme_meme                                                                                                                              	 1.0.0                                        	 f         	 t       	 f
-19	2013-02-14	215	 Count1                                                                                                                                 	 1.0.0                                        	216	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-28	2013-02-14	242	                                                                                                                                        	                                              	243	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	 1.4.1                                        	 f         	 t       	 f
-28	2013-02-14	244	                                                                                                                                        	                                              	243	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	 1.4.1                                        	 f         	 t       	 f
-29	2013-02-14	245	                                                                                                                                        	                                              	246	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	 1.4.1                                        	 f         	 t       	 f
-29	2013-02-14	247	                                                                                                                                        	                                              	246	 toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/peakcalling_macs14/1.4.1                                                                   	 1.4.1                                        	 f         	 t       	 f
-29	2013-02-14	251	                                                                                                                                        	                                              	252	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	251	                                                                                                                                        	                                              	257	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	252	 gops_intersect_1                                                                                                                       	 1.0.0                                        	262	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-29	2013-02-14	252	 gops_intersect_1                                                                                                                       	 1.0.0                                        	267	 Count1                                                                                                                                 	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	253	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	252	 gops_intersect_1                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	253	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	257	 gops_subtract_1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	254	 get_flanks1                                                                                                                            	 1.0.0                                        	253	 cshl_find_and_replace                                                                                                                  	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	255	                                                                                                                                        	                                              	254	 get_flanks1                                                                                                                            	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	255	                                                                                                                                        	                                              	256	 cshl_grep_tool                                                                                                                         	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	257	 gops_subtract_1                                                                                                                        	 1.0.0                                        	258	 cshl_awk_tool                                                                                                                          	                                              	 f         	 t       	 f
-29	2013-02-14	258	 cshl_awk_tool                                                                                                                          	                                              	259	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-29	2013-02-14	259	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	266	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	260	                                                                                                                                        	                                              	259	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-29	2013-02-14	260	                                                                                                                                        	                                              	261	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-29	2013-02-14	260	                                                                                                                                        	                                              	265	 trap                                                                                                                                   	                                              	 f         	 t       	 f
-29	2013-02-14	261	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	263	 Show beginning1                                                                                                                        	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	262	 cshl_awk_tool                                                                                                                          	                                              	261	 Extract genomic DNA 1                                                                                                                  	 2.2.2                                        	 f         	 t       	 f
-29	2013-02-14	263	 Show beginning1                                                                                                                        	 1.0.0                                        	264	 meme_meme                                                                                                                              	 1.0.0                                        	 f         	 t       	 f
-29	2013-02-14	267	 Count1                                                                                                                                 	 1.0.0                                        	268	 barchart_gnuplot                                                                                                                       	 1.0.0                                        	 f         	 t       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 t       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 t       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	276	 mergeCols1                                                                                                                             	 1.0.1                                        	277	 Cut1                                                                                                                                   	 1.0.1                                        	 f         	 f       	 f
-31	2013-02-18	274	                                                                                                                                        	                                              	275	 addValue                                                                                                                               	 1.0.0                                        	 f         	 f       	 f
-31	2013-02-18	275	 addValue                                                                                                                               	 1.0.0                                        	276	 mergeCols1                                                                                                                             	 1.0.1                                        	 f         	 f       	 f
diff -r 4f7e6612906b -r e94dc7945639 train_transformer.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/train_transformer.py	Sun Oct 16 11:52:10 2022 +0000
@@ -0,0 +1,73 @@
+import tensorflow as tf
+import transformer_network
+import utils
+from tensorflow.keras.layers import (Dense, Dropout, GlobalAveragePooling1D,
+                                     Input)
+from tensorflow.keras.models import Model
+
+
+def create_model(vocab_size, config):
+    embed_dim = config["embedding_dim"]
+    ff_dim = config["feed_forward_dim"]
+    max_len = config["maximum_path_length"]
+    dropout = config["dropout"]
+
+    inputs = Input(shape=(max_len,))
+    embedding_layer = transformer_network.TokenAndPositionEmbedding(max_len, vocab_size, embed_dim)
+    x = embedding_layer(inputs)
+    transformer_block = transformer_network.TransformerBlock(embed_dim, config["n_heads"], ff_dim)
+    x, weights = transformer_block(x)
+    x = GlobalAveragePooling1D()(x)
+    x = Dropout(dropout)(x)
+    x = Dense(ff_dim, activation="relu")(x)
+    x = Dropout(dropout)(x)
+    outputs = Dense(vocab_size, activation="sigmoid")(x)
+    return Model(inputs=inputs, outputs=[outputs, weights])
+
+
+def create_enc_transformer(train_data, train_labels, test_data, test_labels, f_dict, r_dict, c_wts, c_tools, pub_conn, tr_t_freq, config):
+    print("Train transformer...")
+    vocab_size = len(f_dict) + 1
+
+    enc_optimizer = tf.keras.optimizers.Adam(learning_rate=config["learning_rate"])
+
+    model = create_model(vocab_size, config)
+
+    u_tr_y_labels, u_tr_y_labels_dict = utils.get_u_tr_labels(train_labels)
+    u_te_y_labels, u_te_y_labels_dict = utils.get_u_tr_labels(test_labels)
+
+    trained_on_labels = [int(item) for item in list(u_tr_y_labels_dict.keys())]
+
+    epo_tr_batch_loss = list()
+    epo_tr_batch_acc = list()
+    all_sel_tool_ids = list()
+
+    te_lowest_t_ids = utils.get_low_freq_te_samples(test_data, test_labels, tr_t_freq)
+    tr_log_step = config["tr_logging_step"]
+    te_log_step = config["te_logging_step"]
+    n_train_steps = config["n_train_iter"]
+    te_batch_size = config["te_batch_size"]
+    tr_batch_size = config["tr_batch_size"]
+    sel_tools = list()
+    for batch in range(n_train_steps):
+        x_train, y_train, sel_tools = utils.sample_balanced_tr_y(train_data, train_labels, u_tr_y_labels_dict, tr_batch_size, tr_t_freq, sel_tools)
+        all_sel_tool_ids.extend(sel_tools)
+        with tf.GradientTape() as model_tape:
+            prediction, att_weights = model(x_train, training=True)
+            tr_loss, tr_cat_loss = utils.compute_loss(y_train, prediction)
+            tr_acc = tf.reduce_mean(utils.compute_acc(y_train, prediction))
+        trainable_vars = model.trainable_variables
+        model_gradients = model_tape.gradient(tr_loss, trainable_vars)
+        enc_optimizer.apply_gradients(zip(model_gradients, trainable_vars))
+        epo_tr_batch_loss.append(tr_loss.numpy())
+        epo_tr_batch_acc.append(tr_acc.numpy())
+        if (batch + 1) % tr_log_step == 0:
+            print("Total train data size: ", train_data.shape, train_labels.shape)
+            print("Batch train data size: ", x_train.shape, y_train.shape)
+            print("At Step {}/{} training loss:".format(str(batch + 1), str(n_train_steps)))
+            print(tr_loss.numpy())
+        if (batch + 1) % te_log_step == 0:
+            print("Predicting on test data...")
+            utils.validate_model(test_data, test_labels, te_batch_size, model, f_dict, r_dict, u_te_y_labels_dict, trained_on_labels, te_lowest_t_ids)
+    print("Saving model after training for {} steps".format(n_train_steps))
+    utils.save_model_file(model, r_dict, c_wts, c_tools, pub_conn, config["trained_model_path"])
diff -r 4f7e6612906b -r e94dc7945639 transformer_network.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/transformer_network.py	Sun Oct 16 11:52:10 2022 +0000
@@ -0,0 +1,39 @@
+import tensorflow as tf
+from tensorflow.keras.layers import (Dense, Dropout, Embedding, Layer,
+                                     LayerNormalization, MultiHeadAttention)
+from tensorflow.keras.models import Sequential
+
+
+class TransformerBlock(Layer):
+    def __init__(self, embed_dim, num_heads, ff_dim, rate=0.1):
+        super(TransformerBlock, self).__init__()
+        self.att = MultiHeadAttention(num_heads=num_heads, key_dim=embed_dim, dropout=rate)
+        self.ffn = Sequential(
+            [Dense(ff_dim, activation="relu"), Dense(embed_dim)]
+        )
+        self.layernorm1 = LayerNormalization(epsilon=1e-6)
+        self.layernorm2 = LayerNormalization(epsilon=1e-6)
+        self.dropout1 = Dropout(rate)
+        self.dropout2 = Dropout(rate)
+
+    def call(self, inputs, training):
+        attn_output, attention_scores = self.att(inputs, inputs, inputs, return_attention_scores=True, training=training)
+        attn_output = self.dropout1(attn_output, training=training)
+        out1 = self.layernorm1(inputs + attn_output)
+        ffn_output = self.ffn(out1)
+        ffn_output = self.dropout2(ffn_output, training=training)
+        return self.layernorm2(out1 + ffn_output), attention_scores
+
+
+class TokenAndPositionEmbedding(Layer):
+    def __init__(self, maxlen, vocab_size, embed_dim):
+        super(TokenAndPositionEmbedding, self).__init__()
+        self.token_emb = Embedding(input_dim=vocab_size, output_dim=embed_dim, mask_zero=True)
+        self.pos_emb = Embedding(input_dim=maxlen, output_dim=embed_dim, mask_zero=True)
+
+    def call(self, x):
+        maxlen = tf.shape(x)[-1]
+        positions = tf.range(start=0, limit=maxlen, delta=1)
+        positions = self.pos_emb(positions)
+        x = self.token_emb(x)
+        return x + positions
diff -r 4f7e6612906b -r e94dc7945639 utils.py
--- a/utils.py	Fri May 06 09:05:18 2022 +0000
+++ b/utils.py	Sun Oct 16 11:52:10 2022 +0000
@@ -1,11 +1,15 @@
 import json
+import os
 import random
 
 import h5py
 import numpy as np
+import pandas as pd
 import tensorflow as tf
-from numpy.random import choice
-from tensorflow.keras import backend
+
+binary_ce = tf.keras.losses.BinaryCrossentropy()
+binary_acc = tf.keras.metrics.BinaryAccuracy()
+categorical_ce = tf.keras.metrics.CategoricalCrossentropy(from_logits=True)
 
 
 def read_file(file_path):
@@ -17,6 +21,43 @@
     return file_content
 
 
+def write_file(file_path, content):
+    """
+    Write a file
+    """
+    remove_file(file_path)
+    with open(file_path, "w") as json_file:
+        json_file.write(json.dumps(content))
+
+
+def save_h5_data(inp, tar, filename):
+    hf_file = h5py.File(filename, 'w')
+    hf_file.create_dataset("input", data=inp)
+    hf_file.create_dataset("target", data=tar)
+    hf_file.close()
+
+
+def get_low_freq_te_samples(te_data, te_target, tr_freq_dict):
+    lowest_tool_te_ids = list()
+    lowest_t_ids = get_lowest_tools(tr_freq_dict)
+    for i, te_labels in enumerate(te_target):
+        tools_pos = np.where(te_labels > 0)[0]
+        tools_pos = [str(int(item)) for item in tools_pos]
+        intersection = list(set(tools_pos).intersection(set(lowest_t_ids)))
+        if len(intersection) > 0:
+            lowest_tool_te_ids.append(i)
+            lowest_t_ids = [item for item in lowest_t_ids if item not in intersection]
+    return lowest_tool_te_ids
+
+
+def save_processed_workflows(file_path, unique_paths):
+    workflow_paths_unique = ""
+    for path in unique_paths:
+        workflow_paths_unique += path + "\n"
+    with open(file_path, "w") as workflows_file:
+        workflows_file.write(workflow_paths_unique)
+
+
 def format_tool_id(tool_link):
     """
     Extract tool id from tool link
@@ -26,158 +67,166 @@
     return tool_id
 
 
-def set_trained_model(dump_file, model_values):
-    """
-    Create an h5 file with the trained weights and associated dicts
-    """
-    hf_file = h5py.File(dump_file, "w")
-    for key in model_values:
-        value = model_values[key]
-        if key == "model_weights":
-            for idx, item in enumerate(value):
-                w_key = "weight_" + str(idx)
-                if w_key in hf_file:
-                    hf_file.modify(w_key, item)
-                else:
-                    hf_file.create_dataset(w_key, data=item)
-        else:
-            if key in hf_file:
-                hf_file.modify(key, json.dumps(value))
-            else:
-                hf_file.create_dataset(key, data=json.dumps(value))
+def save_model_file(model, r_dict, c_wts, c_tools, s_conn, model_file):
+    model.save_weights(model_file, save_format="h5")
+    hf_file = h5py.File(model_file, 'r+')
+    model_values = {
+        "reverse_dict": r_dict,
+        "class_weights": c_wts,
+        "compatible_tools": c_tools,
+        "standard_connections": s_conn
+    }
+    for k in model_values:
+        hf_file.create_dataset(k, data=json.dumps(model_values[k]))
     hf_file.close()
 
 
-def weighted_loss(class_weights):
-    """
-    Create a weighted loss function. Penalise the misclassification
-    of classes more with the higher usage
-    """
-    weight_values = list(class_weights.values())
-    weight_values.extend(weight_values)
+def remove_file(file_path):
+    if os.path.exists(file_path):
+        os.remove(file_path)
+
 
-    def weighted_binary_crossentropy(y_true, y_pred):
-        # add another dimension to compute dot product
-        expanded_weights = tf.expand_dims(weight_values, axis=-1)
-        bce = backend.binary_crossentropy(y_true, y_pred)
-        return backend.dot(bce, expanded_weights)
-
-    return weighted_binary_crossentropy
+def verify_oversampling_freq(oversampled_tr_data, rev_dict):
+    """
+    Compute the frequency of tool sequences after oversampling
+    """
+    freq_dict = dict()
+    freq_dict_names = dict()
+    for tr_data in oversampled_tr_data:
+        t_pos = np.where(tr_data > 0)[0]
+        last_tool_id = str(int(tr_data[t_pos[-1]]))
+        if last_tool_id not in freq_dict:
+            freq_dict[last_tool_id] = 0
+            freq_dict_names[rev_dict[int(last_tool_id)]] = 0
+        freq_dict[last_tool_id] += 1
+        freq_dict_names[rev_dict[int(last_tool_id)]] += 1
+    s_freq = dict(sorted(freq_dict_names.items(), key=lambda kv: kv[1], reverse=True))
+    return s_freq
 
 
-def balanced_sample_generator(
-    train_data, train_labels, batch_size, l_tool_tr_samples, reverse_dictionary
-):
-    while True:
-        dimension = train_data.shape[1]
-        n_classes = train_labels.shape[1]
-        tool_ids = list(l_tool_tr_samples.keys())
-        random.shuffle(tool_ids)
-        generator_batch_data = np.zeros([batch_size, dimension])
-        generator_batch_labels = np.zeros([batch_size, n_classes])
-        generated_tool_ids = choice(tool_ids, batch_size)
-        for i in range(batch_size):
-            random_toolid = generated_tool_ids[i]
-            sample_indices = l_tool_tr_samples[str(random_toolid)]
-            random_index = random.sample(range(0, len(sample_indices)), 1)[0]
-            random_tr_index = sample_indices[random_index]
-            generator_batch_data[i] = train_data[random_tr_index]
-            generator_batch_labels[i] = train_labels[random_tr_index]
-        yield generator_batch_data, generator_batch_labels
+def collect_sampled_tool_freq(collected_dict, c_freq):
+    for t in c_freq:
+        if t not in collected_dict:
+            collected_dict[t] = int(c_freq[t])
+        else:
+            collected_dict[t] += int(c_freq[t])
+    return collected_dict
+
+
+def save_data_as_dict(f_dict, r_dict, inp, tar, save_path):
+    inp_tar = dict()
+    for index, (i, t) in enumerate(zip(inp, tar)):
+        i_pos = np.where(i > 0)[0]
+        i_seq = ",".join([str(int(item)) for item in i[1:i_pos[-1] + 1]])
+        t_pos = np.where(t > 0)[0]
+        t_seq = ",".join([str(int(item)) for item in t[1:t_pos[-1] + 1]])
+        if i_seq not in inp_tar:
+            inp_tar[i_seq] = list()
+        inp_tar[i_seq].append(t_seq)
+    size = 0
+    for item in inp_tar:
+        size += len(inp_tar[item])
+    print("Size saved file: ", size)
+    write_file(save_path, inp_tar)
+
+
+def read_train_test(datapath):
+    file_obj = h5py.File(datapath, 'r')
+    data_input = np.array(file_obj["input"])
+    data_target = np.array(file_obj["target"])
+    return data_input, data_target
 
 
-def compute_precision(
-    model,
-    x,
-    y,
-    reverse_data_dictionary,
-    usage_scores,
-    actual_classes_pos,
-    topk,
-    standard_conn,
-    last_tool_id,
-    lowest_tool_ids,
-):
-    """
-    Compute absolute and compatible precision
-    """
-    pred_t_name = ""
-    top_precision = 0.0
-    mean_usage = 0.0
-    usage_wt_score = list()
-    pub_precision = 0.0
-    lowest_pub_prec = 0.0
-    lowest_norm_prec = 0.0
-    pub_tools = list()
-    actual_next_tool_names = list()
-    test_sample = np.reshape(x, (1, len(x)))
+def sample_balanced_tr_y(x_seqs, y_labels, ulabels_tr_y_dict, b_size, tr_t_freq, prev_sel_tools):
+    batch_y_tools = list(ulabels_tr_y_dict.keys())
+    random.shuffle(batch_y_tools)
+    label_tools = list()
+    rand_batch_indices = list()
+    sel_tools = list()
+
+    unselected_tools = [t for t in batch_y_tools if t not in prev_sel_tools]
+    rand_selected_tools = unselected_tools[:b_size]
 
-    # predict next tools for a test path
-    prediction = model.predict(test_sample, verbose=0)
-
-    # divide the predicted vector into two halves - one for published and
-    # another for normal workflows
-    nw_dimension = prediction.shape[1]
-    half_len = int(nw_dimension / 2)
+    for l_tool in rand_selected_tools:
+        seq_indices = ulabels_tr_y_dict[l_tool]
+        random.shuffle(seq_indices)
+        rand_s_index = np.random.randint(0, len(seq_indices), 1)[0]
+        rand_sample = seq_indices[rand_s_index]
+        sel_tools.append(l_tool)
+        rand_batch_indices.append(rand_sample)
+        label_tools.append(l_tool)
 
-    # predict tools
-    prediction = np.reshape(prediction, (nw_dimension,))
-    # get predictions of tools from published workflows
-    standard_pred = prediction[:half_len]
-    # get predictions of tools from normal workflows
-    normal_pred = prediction[half_len:]
+    x_batch_train = x_seqs[rand_batch_indices]
+    y_batch_train = y_labels[rand_batch_indices]
 
-    standard_prediction_pos = np.argsort(standard_pred, axis=-1)
-    standard_topk_prediction_pos = standard_prediction_pos[-topk]
+    unrolled_x = tf.convert_to_tensor(x_batch_train, dtype=tf.int64)
+    unrolled_y = tf.convert_to_tensor(y_batch_train, dtype=tf.int64)
+    return unrolled_x, unrolled_y, sel_tools
+
 
-    normal_prediction_pos = np.argsort(normal_pred, axis=-1)
-    normal_topk_prediction_pos = normal_prediction_pos[-topk]
+def sample_balanced_te_y(x_seqs, y_labels, ulabels_tr_y_dict, b_size):
+    batch_y_tools = list(ulabels_tr_y_dict.keys())
+    random.shuffle(batch_y_tools)
+    label_tools = list()
+    rand_batch_indices = list()
+    sel_tools = list()
+    for l_tool in batch_y_tools:
+        seq_indices = ulabels_tr_y_dict[l_tool]
+        random.shuffle(seq_indices)
+        rand_s_index = np.random.randint(0, len(seq_indices), 1)[0]
+        rand_sample = seq_indices[rand_s_index]
+        sel_tools.append(l_tool)
+        if rand_sample not in rand_batch_indices:
+            rand_batch_indices.append(rand_sample)
+            label_tools.append(l_tool)
+        if len(rand_batch_indices) == b_size:
+            break
+    x_batch_train = x_seqs[rand_batch_indices]
+    y_batch_train = y_labels[rand_batch_indices]
+
+    unrolled_x = tf.convert_to_tensor(x_batch_train, dtype=tf.int64)
+    unrolled_y = tf.convert_to_tensor(y_batch_train, dtype=tf.int64)
+    return unrolled_x, unrolled_y, sel_tools
+
 
-    # get true tools names
-    for a_t_pos in actual_classes_pos:
-        if a_t_pos > half_len:
-            t_name = reverse_data_dictionary[int(a_t_pos - half_len)]
-        else:
-            t_name = reverse_data_dictionary[int(a_t_pos)]
-        actual_next_tool_names.append(t_name)
-    last_tool_name = reverse_data_dictionary[x[-1]]
-    # compute scores for published recommendations
-    if standard_topk_prediction_pos in reverse_data_dictionary:
-        pred_t_name = reverse_data_dictionary[int(standard_topk_prediction_pos)]
-        if last_tool_name in standard_conn:
-            pub_tools = standard_conn[last_tool_name]
-            if pred_t_name in pub_tools:
-                pub_precision = 1.0
-                # count precision only when there is actually true published tools
-                if last_tool_id in lowest_tool_ids:
-                    lowest_pub_prec = 1.0
-                else:
-                    lowest_pub_prec = np.nan
-                if standard_topk_prediction_pos in usage_scores:
-                    usage_wt_score.append(
-                        np.log(usage_scores[standard_topk_prediction_pos] + 1.0)
-                    )
-        else:
-            # count precision only when there is actually true published tools
-            # else set to np.nan. Set to 0 only when there is wrong prediction
-            pub_precision = np.nan
-            lowest_pub_prec = np.nan
-    # compute scores for normal recommendations
-    if normal_topk_prediction_pos in reverse_data_dictionary:
-        pred_t_name = reverse_data_dictionary[int(normal_topk_prediction_pos)]
-        if pred_t_name in actual_next_tool_names:
-            if normal_topk_prediction_pos in usage_scores:
-                usage_wt_score.append(
-                    np.log(usage_scores[normal_topk_prediction_pos] + 1.0)
-                )
-            top_precision = 1.0
-            if last_tool_id in lowest_tool_ids:
-                lowest_norm_prec = 1.0
-            else:
-                lowest_norm_prec = np.nan
-    if len(usage_wt_score) > 0:
-        mean_usage = np.mean(usage_wt_score)
-    return mean_usage, top_precision, pub_precision, lowest_pub_prec, lowest_norm_prec
+def get_u_tr_labels(y_tr):
+    labels = list()
+    labels_pos_dict = dict()
+    for i, item in enumerate(y_tr):
+        label_pos = np.where(item > 0)[0]
+        labels.extend(label_pos)
+        for label in label_pos:
+            if label not in labels_pos_dict:
+                labels_pos_dict[label] = list()
+            labels_pos_dict[label].append(i)
+    u_labels = list(set(labels))
+    for item in labels_pos_dict:
+        labels_pos_dict[item] = list(set(labels_pos_dict[item]))
+    return u_labels, labels_pos_dict
+
+
+def compute_loss(y_true, y_pred, class_weights=None):
+    y_true = tf.cast(y_true, dtype=tf.float32)
+    loss = binary_ce(y_true, y_pred)
+    categorical_loss = categorical_ce(y_true, y_pred)
+    if class_weights is None:
+        return tf.reduce_mean(loss), categorical_loss
+    return tf.tensordot(loss, class_weights, axes=1), categorical_loss
+
+
+def compute_acc(y_true, y_pred):
+    return binary_acc(y_true, y_pred)
+
+
+def validate_model(te_x, te_y, te_batch_size, model, f_dict, r_dict, ulabels_te_dict, tr_labels, lowest_t_ids):
+    te_x_batch, y_train_batch, _ = sample_balanced_te_y(te_x, te_y, ulabels_te_dict, te_batch_size)
+    print("Total test data size: ", te_x.shape, te_y.shape)
+    print("Batch test data size: ", te_x_batch.shape, y_train_batch.shape)
+    te_pred_batch, _ = model(te_x_batch, training=False)
+    test_err, _ = compute_loss(y_train_batch, te_pred_batch)
+    print("Test loss:")
+    print(test_err.numpy())
+    print("Test finished")
 
 
 def get_lowest_tools(l_tool_freq, fraction=0.25):
@@ -187,98 +236,7 @@
     return lowest_ids
 
 
-def verify_model(
-    model,
-    x,
-    y,
-    reverse_data_dictionary,
-    usage_scores,
-    standard_conn,
-    lowest_tool_ids,
-    topk_list=[1, 2, 3],
-):
-    """
-    Verify the model on test data
-    """
-    print("Evaluating performance on test data...")
-    print("Test data size: %d" % len(y))
-    size = y.shape[0]
-    precision = np.zeros([len(y), len(topk_list)])
-    usage_weights = np.zeros([len(y), len(topk_list)])
-    epo_pub_prec = np.zeros([len(y), len(topk_list)])
-    epo_lowest_tools_pub_prec = list()
-    epo_lowest_tools_norm_prec = list()
-    lowest_counter = 0
-    # loop over all the test samples and find prediction precision
-    for i in range(size):
-        lowest_pub_topk = list()
-        lowest_norm_topk = list()
-        actual_classes_pos = np.where(y[i] > 0)[0]
-        test_sample = x[i, :]
-        last_tool_id = str(int(test_sample[-1]))
-        for index, abs_topk in enumerate(topk_list):
-            (
-                usg_wt_score,
-                absolute_precision,
-                pub_prec,
-                lowest_p_prec,
-                lowest_n_prec,
-            ) = compute_precision(
-                model,
-                test_sample,
-                y,
-                reverse_data_dictionary,
-                usage_scores,
-                actual_classes_pos,
-                abs_topk,
-                standard_conn,
-                last_tool_id,
-                lowest_tool_ids,
-            )
-            precision[i][index] = absolute_precision
-            usage_weights[i][index] = usg_wt_score
-            epo_pub_prec[i][index] = pub_prec
-            lowest_pub_topk.append(lowest_p_prec)
-            lowest_norm_topk.append(lowest_n_prec)
-        epo_lowest_tools_pub_prec.append(lowest_pub_topk)
-        epo_lowest_tools_norm_prec.append(lowest_norm_topk)
-        if last_tool_id in lowest_tool_ids:
-            lowest_counter += 1
-    mean_precision = np.mean(precision, axis=0)
-    mean_usage = np.mean(usage_weights, axis=0)
-    mean_pub_prec = np.nanmean(epo_pub_prec, axis=0)
-    mean_lowest_pub_prec = np.nanmean(epo_lowest_tools_pub_prec, axis=0)
-    mean_lowest_norm_prec = np.nanmean(epo_lowest_tools_norm_prec, axis=0)
-    return (
-        mean_usage,
-        mean_precision,
-        mean_pub_prec,
-        mean_lowest_pub_prec,
-        mean_lowest_norm_prec,
-        lowest_counter,
-    )
-
-
-def save_model(
-    results,
-    data_dictionary,
-    compatible_next_tools,
-    trained_model_path,
-    class_weights,
-    standard_connections,
-):
-    # save files
-    trained_model = results["model"]
-    best_model_parameters = results["best_parameters"]
-    model_config = trained_model.to_json()
-    model_weights = trained_model.get_weights()
-    model_values = {
-        "data_dictionary": data_dictionary,
-        "model_config": model_config,
-        "best_parameters": best_model_parameters,
-        "model_weights": model_weights,
-        "compatible_tools": compatible_next_tools,
-        "class_weights": class_weights,
-        "standard_connections": standard_connections,
-    }
-    set_trained_model(trained_model_path, model_values)
+def remove_pipe(file_path):
+    dataframe = pd.read_csv(file_path, sep="|", header=None)
+    dataframe = dataframe[1:len(dataframe.index) - 1]
+    return dataframe[1:]