# HG changeset patch
# User bgruening
# Date 1595323414 14400
# Node ID 2d9ca306538d823c6f4c34641c89caa2172368a0
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/im-pipelines commit 598dd288a384481b7602a0f6322c5081dc8da5d9"
diff -r 000000000000 -r 2d9ca306538d macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Tue Jul 21 05:23:34 2020 -0400
@@ -0,0 +1,37 @@
+
+ 1.1.3
+
+
+ im-pipelines
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ @article{rdkit,
+ author = {Greg Landrum and others},
+ title = {RDKit: Open-source cheminformatics},
+ url = {http://www.rdkit.org}
+ }
+
+ @article{im-pipelines,
+ author = {Tim Dudgeon and others},
+ title = {InformaticsMatters pipeline components for cheminformatics and computational chemistry.},
+ url = {https://github.com/InformaticsMatters/pipelines}
+ }
+
+
+
+
diff -r 000000000000 -r 2d9ca306538d max_min_picker.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/max_min_picker.xml Tue Jul 21 05:23:34 2020 -0400
@@ -0,0 +1,98 @@
+
+ diverse compounds from a library with Butina clustering
+
+ macros.xml
+ 0
+
+
+ > $logfile &&
+ cat outp_metrics.txt &>> $logfile &&
+ gzip -d outp.sdf.gz
+ ]]>
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff -r 000000000000 -r 2d9ca306538d test-data/Kinase_inhibs.sdf
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Kinase_inhibs.sdf Tue Jul 21 05:23:34 2020 -0400
@@ -0,0 +1,2823 @@
+
+ SciTegic01171120562D
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+M END
+>
+4358263
+
+>
+Oc1cccc(c1)c2nc(N3CCOCC3)c4oc5ncccc5c4n2
+
+$$$$
+
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+
+>
+CO[C@@H]1[C@@H](C[C@H]2O[C@]1(C)n3c4ccccc4c5c6CNC(=O)c6c7c8ccccc8n2c7c35)N(C)C(=O)c9ccccc9
+
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+
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+>
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+
+>
+Clc1ccc(Nc2nnc(Cc3ccncc3)c4ccccc24)cc1
+
+$$$$
+
+ SciTegic01171120562D
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+>
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+
+>
+CC[C@H](CO)Nc1nc(NCc2ccccc2)c3ncn(C(C)C)c3n1
+
+$$$$
+
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+>
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+Oc1ccc(cc1)c2nc(c([nH]2)c3ccncc3)c4ccc(F)cc4
+
+$$$$
+
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+
+$$$$
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+>
+4255941
+
+>
+CNC(=O)c1cc(Oc2ccc(NC(=O)Nc3ccc(Cl)c(c3)C(F)(F)F)cc2)ccn1
+
+$$$$
+
+ SciTegic01171120562D
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+$$$$
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+>
+COc1cc2c(ncnc2cc1OCCCN3CCCCC3)N4CCN(CC4)C(=O)Nc5ccc(OC(C)C)cc5
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+$$$$
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+M END
+>
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+
+>
+OC(=O)c1ccc(Nc2ncc3CN=C(c4c(F)cccc4F)c5cc(Cl)ccc5-c3n2)cc1
+
+$$$$
diff -r 000000000000 -r 2d9ca306538d test-data/XChemReactionMaker1.sdf
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/XChemReactionMaker1.sdf Tue Jul 21 05:23:34 2020 -0400
@@ -0,0 +1,5393 @@
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+ CDK 0228171352
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+>
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+>
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+$$$$
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+>
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+$$$$
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+$$$$
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+>
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+$$$$
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+M END
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+$$$$
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+M END
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+>
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+$$$$
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+>
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+$$$$
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+M END
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+$$$$
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+M END
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+M END
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+>
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+$$$$
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+M END
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+>
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+$$$$
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+M CHG 1 5 1
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+M END
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+>
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+M END
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+>
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+$$$$
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+M END
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+$$$$
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+M END
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+>
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+$$$$
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+M END
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+>
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+$$$$
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+M END
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+>
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+$$$$
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+M END
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+>
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+$$$$
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+M END
+>
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+>
+33509b1f-56f4-4a43-bc9f-5aea174b9dad
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+$$$$
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+$$$$
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+M END
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+M END
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+$$$$
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+$$$$
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+$$$$
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+$$$$
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+>
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+$$$$
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+>
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+$$$$
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+ CDK 0228171352
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+>
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+$$$$
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+ CDK 0228171352
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+>
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+$$$$
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+ CDK 0228171352
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+ 22 23 0 0 0 0 0 0 0 0999 V2000
+ -7.2630 0.5138 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -5.7817 0.7505 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -5.2461 2.1516 0.0000 Cl 0 0 0 0 0 0 0 0 0 0 0 0
+ -4.8362 -0.4140 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -5.3718 -1.8151 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
+ -3.3550 -0.1773 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.8193 1.2238 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -1.3381 1.4605 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -0.3925 0.2961 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 1.0887 0.5327 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 1.6243 1.9338 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
+ 2.0342 -0.6317 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
+ 3.5155 -0.3950 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 4.4610 -1.5595 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 5.9422 -1.3228 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 6.4779 0.0783 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 7.9591 0.3150 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
+ 5.5323 1.2427 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 4.0511 1.0061 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -0.9282 -1.1050 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.4094 -1.3417 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.9450 -2.7428 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
+ 1 2 1 0 0 0 0
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+ 9 20 1 0 0 0 0
+ 20 21 2 0 0 0 0
+ 21 22 1 0 0 0 0
+ 21 6 1 0 0 0 0
+ 19 13 1 0 0 0 0
+M END
+>
+2cf53a7b-a942-43c1-a30c-0d0dfe3468d8
+
+>
+33509b1f-56f4-4a43-bc9f-5aea174b9dad
+
+$$$$
+
+ CDK 0228171352
+
+ 22 23 0 0 0 0 0 0 0 0999 V2000
+ -3.1089 -4.0623 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -3.3494 -2.5817 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -4.7519 -2.0497 0.0000 Cl 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.1874 -1.6332 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -0.7849 -2.1652 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.4279 -0.1526 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -3.8304 0.3794 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -4.0708 1.8600 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.9088 2.8086 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -3.1493 4.2892 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
+ -1.5064 2.2766 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -1.2659 0.7960 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 0.1366 0.2639 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 0.3771 -1.2166 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
+ 1.2986 1.2125 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
+ 2.7011 0.6805 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 2.9415 -0.8001 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 4.3440 -1.3321 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 5.5060 -0.3836 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 6.9085 -0.9156 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
+ 5.2655 1.0970 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 3.8631 1.6290 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 1 2 1 0 0 0 0
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+ 18 19 2 0 0 0 0
+ 19 20 1 0 0 0 0
+ 19 21 1 0 0 0 0
+ 21 22 2 0 0 0 0
+ 12 6 1 0 0 0 0
+ 22 16 1 0 0 0 0
+M END
+>