Mercurial > repos > bgruening > data_manager_semibin

diff data_manager/data_manager_semibin.xml @ 0:1e4dd26db773 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_semibin commit aa9bfb2fb62547ee8bac34f0de5b3beaa0bfd1a4"
author bgruening
date Fri, 14 Oct 2022 21:29:47 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_semibin.xml	Fri Oct 14 21:29:47 2022 +0000
@@ -0,0 +1,39 @@
+<tool id="data_manager_semibin" name="Download reference genomes (GTDB) for SemiBin" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description></description>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">semibin</requirement>
+    </requirements>
+    <macros>
+        <token name="@TOOL_VERSION@">1.1.1</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@PROFILE@">21.01</token>
+    </macros>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/data_manager_semibin.py'
+    --json '$out_file'
+    $type
+    ]]></command>
+    <inputs>
+        <param name="type" type="hidden" value="" />
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json"/>
+    </outputs>
+    <tests>
+    <test expect_num_outputs="1">
+        <param name="type" value="--test" />
+        <output name="out_file">
+            <assert_contents>
+                <has_text text="test"/>
+                <has_text text="Test"/>
+            </assert_contents>
+        </output>
+    </test>
+    </tests>
+    <help><![CDATA[
+This tool downloads reference genomes (GTDB) for SemiBin
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1038/s41467-022-29843-y</citation>
+    </citations>
+</tool>