annotate deepTools_macros.xml @ 19:01bc5ce13498 draft

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author bgruening
date Mon, 03 Feb 2014 13:56:24 -0500
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1 <macros>
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2 <xml name="bamCorrelate_mode_actions">
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4 <expand macro="region_limit_operation" />
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6 <conditional name="advancedOpt">
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7 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
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8 <option value="no" selected="true">no</option>
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9 <option value="yes">yes</option>
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10 </param>
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11 <when value="no" />
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12 <when value="yes">
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13 <param name="doNotExtendPairedEnds" type="boolean" truevalue="--doNotExtendPairedEnds" falsevalue=""
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14 label="Do not extend paired ends"
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15 help="If set, reads are not extended to match the fragment length reported in the BAM file, instead they will be extended to match the fragment length. Default is to extend the reads if paired end information is available."/>
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17 <param name="ignoreDuplicates" type="boolean" truevalue="--ignoreDuplicates" falsevalue=""
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18 label="Ignore duplicates"
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19 help="If set, reads that have the same orientation and start position will be considered only once. If reads are paired, the mate position also has to coincide to ignore a read." />
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21 <param name="minMappingQuality" type="integer" optional="true" value="1" min="1"
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22 label="Minimum mapping quality"
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23 help= "If set, only reads that have a mapping quality score higher than the given value are considered. *Note* Bowtie's Mapping quality is related to uniqueness: the higher the score, the more unique is a read. A mapping quality defined by Bowtie of 10 or less indicates that there is at least a 1 in 10 chance that the read truly originated elsewhere."/>
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25 <param name="includeZeros" type="boolean" truevalue="--includeZeros" falsevalue=""
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26 label ="Include zeros"
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27 help ="If set, then regions with zero counts for *all* BAM files given are included. The default behavior is to ignore those cases." />
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29 <param name="zMin" type="integer" value="" optional="true" label="Minimum value for the heatmap intensities"
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30 help="If not specified the value is set automatically."/>
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32 <param name="zMax" type="integer" value="" optional="true" label="Maximum value for the heatmap intensities"
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33 help="If not specified the value is set automatically."/>
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34
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35 <expand macro="colormap" />
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36 </when>
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37 </conditional>
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38 </xml>
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40 <xml name="region_limit_operation">
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41 <param name="region" type="text" value=""
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42 label="Region of the genome to limit the operation to"
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43 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example &quot;chr10&quot; or &quot;chr10:456700:891000&quot;" />
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44 </xml>
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46 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
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47 <xml name="requirements">
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48 <requirements>
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49 <requirement type="binary">@BINARY@</requirement>
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50 <requirement type="package" >samtools</requirement>
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51 <requirement type="package" >deepTools</requirement>
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52 <requirement type="package" >ucsc_tools</requirement>
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53 <requirement type="package" version="1.5.4_1093b2d281576f23ee04740bd5eae3f7b8422f7e">deepTools</requirement>
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54 <requirement type="package" version="0.1">ucsc_tools</requirement>
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55 <requirement type="package" version="1.7.1">numpy</requirement>
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56 <requirement type="package" version="0.7.7">pysam</requirement>
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57 <requirement type="package" version="0.12.0">scipy</requirement>
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58 <requirement type="package" version="1.2.1">matplotlib</requirement>
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59 <requirement type="package" version="0.1.19">samtools</requirement>
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60 <requirement type="package" version="12-2013">bx-python</requirement>
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61 <yield />
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62 </requirements>
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63 <version_command>@BINARY@ --version</version_command>
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64 </xml>
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66 <xml name="kmeans_clustering">
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68 <conditional name="used_multiple_regions">
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69 <param name="used_multiple_regions_options" type="select"
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70 label="Did you used multiple regions in ComputeMatrix?"
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71 help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions.">
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72 <option value="yes">Yes, I used multiple regions.</option>
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73 <option value="no">No, I used only one region.</option>
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74 </param>
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75 <when value="no">
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76 <conditional name="clustering">
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77 <param name="clustering_options" type="select" label="Clustering algorithm">
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78 <option value="none">No clustering</option>
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79 <option value="kmeans">Kmeans clustering</option>
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80 </param>
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81 <when value="kmeans">
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82 <param name="k_kmeans" type="integer" value="0" label="Number of clusters to compute"
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83 help="When this option is set, then the matrix is split into clusters using the kmeans algorithm. Only works for data that is not grouped, otherwise only the first group will be clustered. If more specific clustering methods are required it is advisable to save the underlying matrix and run the clustering using other software. The plotting of the clustering may fail (Error: Segmentation fault) if a cluster has very few members compared to the total number or regions. (default: None)."/>
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84 </when>
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85 <when value="none" />
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86 </conditional>
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87 </when>
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88 <when value="yes" />
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89 </conditional>
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91 </xml>
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92 <token name="@kmeans_clusterin@">
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93 #if $advancedOpt.used_multiple_regions.used_multiple_regions_options == 'no':
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94 #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'kmeans':
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95 #if int($advancedOpt.used_multiple_regions.clustering.k_kmeans) > 0:
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96 --kmeans $advancedOpt.used_multiple_regions.clustering.k_kmeans
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97 #end if
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98 #end if
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99 #end if
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100 </token>
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101
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102 <xml name="stdio">
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103 <stdio>
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104 <exit_code range="1:" />
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105 <exit_code range=":-1" />
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106 <regex match="Error:" />
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107 <regex match="Exception:" />
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108 <regex match="EXception:" />
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109 <regex match="Traceback" />
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110 </stdio>
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111 </xml>
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112 <token name="@REFERENCES@">
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113
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114 .. class:: infomark
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115
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116 For more informations, please visit the `project site`_.
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117
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118 If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com
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119
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120 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.
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121
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122
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123 .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
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124 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
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125 .. _project site: https://github.com/fidelram/deepTools/wiki/
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126
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127 </token>
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128
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129 <xml name="multiple_input_bams">
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130 <repeat name="input_files" title="BAM files" min="2">
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131 <param name="bamfile" type="data" format="bam"
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132 label="Bam file"
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133 help="The BAM file must be sorted."/>
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134 <param name="label" type="text" size="30" optional="true" value=""
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135 label="Label"
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136 help="Label to use in the output. If not given the dataset name will be used instead."/>
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137 </repeat>
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138 </xml>
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139
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140 <token name="@multiple_input_bams@">
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141 #import tempfile
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142 #set $temp_dir = os.path.abspath(tempfile.mkdtemp())
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143 #set files=[]
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144 #set labels=[]
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145 #for $i in $input_files:
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146 #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir )
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147 #set $temp_input_path = $temp_input_handle.name
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148 #silent $temp_input_handle.close()
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149 #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path))
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150 #silent os.system("ln -s %s %s.bam.bai" % (str($i.bamfile.metadata.bam_index), $temp_input_path))
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151 #silent $files.append('%s.bam' % $temp_input_path)
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152
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153 ##set $files += [str($i.bamfile)]
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154 #if str($i.label.value) != "":
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155 #set $labels += ["\"%s\"" % ($i.label.value)]
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156 #else
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157 #set $labels += ["\"%s\"" % ($i.bamfile.name)]
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158 #end if
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159 #end for
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160 </token>
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161
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162 <xml name="reference_genome_source">
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163 <conditional name="source">
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164 <param name="ref_source" type="select" label="Reference genome">
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165 <option value="cached">locally cached</option>
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166 <option value="history">in your history</option>
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167 </param>
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168 <when value="cached">
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169 <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">
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170 <options from_data_table="deepTools_seqs">
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171 <filter type="sort_by" column="1" />
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172 <validator type="no_options" message="No indexes are available." />
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173 </options>
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174 </param>
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175 </when>
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176 <when value="history">
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177 <param name="input1" type="data" format="twobit" label="Select a reference dataset in 2bit format" />
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178 </when>
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179 </conditional>
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180 </xml>
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181
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182 <token name="@reference_genome_source@">
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183 #if $source.ref_source=="history":
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184 --genome $source.input1
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185 #else:
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186 --genome "${source.input1_2bit.fields.path}"
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187 #end if
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188 </token>
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189
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190 <xml name="effectiveGenomeSize">
0
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191 <conditional name="effectiveGenomeSize">
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parents:
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192 <param name="effectiveGenomeSize_opt" type="select" label="Effective genome size"
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parents:
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193 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded.
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194 Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly.
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195 See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes.">
18
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parents: 17
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196 <option value="93260000">ce10 (93260000)</option>
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parents: 17
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197 <option value="121400000">dm3 (121400000)</option>
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parents: 17
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198 <option value="2451960000" selected="true">hg19 (2451960000)</option>
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parents: 17
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199 <option value="2150570000">mm9 (2150570000)</option>
0
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parents:
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200 <option value="specific">user specified</option>
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parents:
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201 </param>
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parents:
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202 <when value="specific">
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203 <param name="effectiveGenomeSize" type="integer" value="" label="Effective genome size" />
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parents:
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204 </when>
18
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parents: 17
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205 <when value="2150570000" />
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parents: 17
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206 <when value="2451960000" />
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parents: 17
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207 <when value="121400000" />
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parents: 17
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208 <when value="93260000" />
0
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parents:
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209 </conditional>
13
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parents: 12
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210 </xml>
0
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211
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parents: 12
diff changeset
212 <xml name="image_file_format">
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parents: 9
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213 <param name="outFileFormat" type="select" label="Image file format">
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parents: 9
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214 <option value="png" selected="true">png</option>
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parents: 9
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215 <option value="pdf">pdf</option>
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parents: 9
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216 <option value="svg">svg</option>
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parents: 9
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217 <option value="eps">eps</option>
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parents: 9
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218 <option value="emf">emf</option>
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parents: 9
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219 </param>
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parents: 12
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220 </xml>
10
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parents: 9
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221
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parents: 12
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222 <xml name="input_save_matrix_values">
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parents: 12
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223 <param name="saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/>
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parents: 12
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224 </xml>
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parents: 12
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225
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parents: 12
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226 <xml name="input_graphic_output_settings">
0
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parents:
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227 <conditional name="output" >
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parents:
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228 <param name="showOutputSettings" type="select" label="Show advanced output settings" >
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parents:
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229 <option value="no" selected="true">no</option>
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parents:
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230 <option value="yes">yes</option>
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parents:
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231 </param>
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parents:
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232 <when value="no" />
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parents:
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233 <when value="yes">
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234 <yield />
13
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parents: 12
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235 <param name="saveData" type="boolean" label="Save the data underlying the average profile"/>
0
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parents:
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236 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/>
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237 </when>
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parents:
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238 </conditional>
13
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parents: 12
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239 </xml>
0
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parents:
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240
13
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parents: 12
diff changeset
241 <xml name="input_image_file_format">
11
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parents: 10
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242 <param name="outFileFormat" type="select" label="Image file format">
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parents: 10
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243 <option value="png" selected="true">png</option>
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parents: 10
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244 <option value="pdf">pdf</option>
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parents: 10
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245 <option value="svg">svg</option>
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parents: 10
diff changeset
246 <option value="eps">eps</option>
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parents: 10
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247 <option value="emf">emf</option>
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parents: 10
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248 </param>
13
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parents: 12
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249 </xml>
11
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parents: 10
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250
13
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parents: 12
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251 <xml name="output_image_file_format">
10
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parents: 9
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252 <data format="png" name="outFileName" label="${tool.name} image">
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parents: 9
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253 <change_format>
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parents: 9
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254 <when input="output.outFileFormat" value="pdf" format="pdf" />
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parents: 9
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255 <when input="output.outFileFormat" value="svg" format="svg" />
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parents: 9
diff changeset
256 <when input="output.outFileFormat" value="eps" format="eps" />
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parents: 9
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257 <when input="output.outFileFormat" value="emf" format="emf" />
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parents: 9
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258 </change_format>
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parents: 9
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259 </data>
13
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parents: 12
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260 </xml>
11
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parents: 10
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261
13
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diff changeset
262 <xml name="output_save_matrix_values">
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parents: 12
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263 <data format="tabular" name="outFileNameMatrix" label="${tool.name} on ${on_string}: Heatmap values">
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parents: 12
diff changeset
264 <filter>
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parents: 12
diff changeset
265 ((
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parents: 12
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266 output['showOutputSettings'] == 'yes' and
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parents: 12
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267 output['saveMatrix'] is True
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parents: 12
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268 ))
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parents: 12
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269 </filter>
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parents: 12
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270 </data>
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parents: 12
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271 </xml>
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parents: 12
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272
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parents: 12
diff changeset
273 <xml name="output_graphic_outputs">
10
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parents: 9
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274 <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column">
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parents: 9
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275 <filter>
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parents: 9
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276 ((
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parents: 9
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277 output['showOutputSettings'] == 'yes' and
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parents: 9
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278 output['saveData'] is True
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parents: 9
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279 ))
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parents: 9
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280 </filter>
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parents: 9
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281 </data>
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parents: 9
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282 <data format="bed" name="outFileSortedRegions" label="${tool.name} on ${on_string}: sorted/filtered regions">
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parents: 9
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283 <filter>
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parents: 9
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284 ((
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parents: 9
diff changeset
285 output['showOutputSettings'] == 'yes' and
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parents: 9
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286 output['saveSortedRegions'] is True
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parents: 9
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287 ))
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parents: 9
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288 </filter>
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parents: 9
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289 </data>
13
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parents: 12
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290 </xml>
10
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parents: 9
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291
13
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parents: 12
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292 <xml name="colormap">
0
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parents:
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293 <param name="colorMap" type="select" label="Color map to use for the heatmap" help=" Available color map names can be found here: http://www.astro.lsa.umich.edu/~msshin/science/code/matplotlib_cm/">
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parents:
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294 <option value="RdYlBu" selected="true">RdYlBu</option>
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parents:
diff changeset
295 <option value="Accent">Accent</option>
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parents:
diff changeset
296 <option value="Spectral">Spectral</option>
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parents:
diff changeset
297 <option value="Set1">Set1</option>
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parents:
diff changeset
298 <option value="Set2">Set2</option>
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parents:
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299 <option value="Set3">Set3</option>
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parents:
diff changeset
300 <option value="Dark2">Dark2</option>
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parents:
diff changeset
301 <option value="Reds">Reds</option>
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parents:
diff changeset
302 <option value="Oranges">Oranges</option>
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parents:
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303 <option value="Greens">Greens</option>
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parents:
diff changeset
304 <option value="Blues">Blues</option>
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parents:
diff changeset
305 <option value="Greys">Greys</option>
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parents:
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306 <option value="Purples">Purples</option>
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parents:
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307 <option value="Paired">Paired</option>
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parents:
diff changeset
308 <option value="Pastel1">Pastel1</option>
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parents:
diff changeset
309 <option value="Pastel2">Pastel2</option>
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parents:
diff changeset
310 <option value="spring">spring</option>
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parents:
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311 <option value="summer">summer</option>
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parents:
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312 <option value="autumn">autumn</option>
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parents:
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313 <option value="winter">winter</option>
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parents:
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314 <option value="hot">hot</option>
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parents:
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315 <option value="coolwarm">coolwarm</option>
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parents:
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316 <option value="cool">cool</option>
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parents:
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317 <option value="seismic">seismic</option>
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parents:
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318 <option value="terrain">terrain</option>
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parents:
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319 <option value="ocean">ocean</option>
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parents:
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320 <option value="rainbow">rainbow</option>
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parents:
diff changeset
321 <option value="bone">bone</option>
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parents:
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322 <option value="flag">flag</option>
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parents:
diff changeset
323 <option value="prism">prism</option>
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parents:
diff changeset
324 <option value="cubehelix">cubehelix</option>
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parents:
diff changeset
325 <option value="binary">binary</option>
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parents:
diff changeset
326 <option value="pink">pink</option>
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parents:
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327 <option value="gray">gray</option>
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parents:
diff changeset
328 <option value="copper">copper</option>
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parents:
diff changeset
329 <option value="BrBG">BrBG</option>
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parents:
diff changeset
330 <option value="BuGn">BuGn</option>
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parents:
diff changeset
331 <option value="BuPu">BuPu</option>
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parents:
diff changeset
332 <option value="GnBu">GnBu</option>
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parents:
diff changeset
333 <option value="OrRd">OrRd</option>
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parents:
diff changeset
334 <option value="PiYG">PiYG</option>
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parents:
diff changeset
335 <option value="PRGn">PRGn</option>
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parents:
diff changeset
336 <option value="PuOr">PuOr</option>
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parents:
diff changeset
337 <option value="PuRd">PuRd</option>
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parents:
diff changeset
338 <option value="PuBu">PuBu</option>
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parents:
diff changeset
339 <option value="RdBu">RdBu</option>
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parents:
diff changeset
340 <option value="RdGy">RdGy</option>
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parents:
diff changeset
341 <option value="RdPu">RdPu</option>
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parents:
diff changeset
342 <option value="YlGn">YlGn</option>
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parents:
diff changeset
343 <option value="PuBuGn">PuBuGn</option>
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parents:
diff changeset
344 <option value="RdYlGn">RdYlGn</option>
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parents:
diff changeset
345 <option value="YlGnBu">YlGnBu</option>
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parents:
diff changeset
346 <option value="YlOrBr">YlOrBr</option>
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parents:
diff changeset
347 <option value="YlOrRd">YlOrRd</option>
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parents:
diff changeset
348 <option value="gist_gray">gist_gray</option>
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parents:
diff changeset
349 <option value="gist_stern">gist_stern</option>
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parents:
diff changeset
350 <option value="gist_earth">gist_earth</option>
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parents:
diff changeset
351 <option value="gist_yarg">gist_yarg</option>
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parents:
diff changeset
352 <option value="gist_ncar">gist_ncar</option>
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parents:
diff changeset
353 <option value="gist_rainbow">gist_rainbow</option>
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parents:
diff changeset
354 <option value="gist_heat">gist_heat</option>
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parents:
diff changeset
355 <option value="gnuplot">gnuplot</option>
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parents:
diff changeset
356 <option value="gnuplot2">gnuplot2</option>
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parents:
diff changeset
357 <option value="CMRmap">CMRmap</option>
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parents:
diff changeset
358 <option value="bwr">bwr</option>
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parents:
diff changeset
359 <option value="hsv">hsv</option>
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parents:
diff changeset
360 <option value="brg">brg</option>
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parents:
diff changeset
361 <option value="jet">jet</option>
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parents:
diff changeset
362 <option value="afmhot">afmhot</option>
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parents:
diff changeset
363 <option value="Accent_r">Accent reversed</option>
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parents:
diff changeset
364 <option value="Spectral_r">Spectral reversed</option>
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parents:
diff changeset
365 <option value="Set1_r">Set1 reversed</option>
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parents:
diff changeset
366 <option value="Set2_r">Set2 reversed</option>
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parents:
diff changeset
367 <option value="Set3_r">Set3 reversed</option>
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parents:
diff changeset
368 <option value="Dark2_r">Dark2 reversed</option>
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parents:
diff changeset
369 <option value="Reds_r">Reds reversed</option>
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parents:
diff changeset
370 <option value="Oranges_r">Oranges reversed</option>
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parents:
diff changeset
371 <option value="Greens_r">Greens reversed</option>
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parents:
diff changeset
372 <option value="Blues_r">Blues reversed</option>
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parents:
diff changeset
373 <option value="Greys_r">Greys reversed</option>
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parents:
diff changeset
374 <option value="Purples_r">Purples reversed</option>
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parents:
diff changeset
375 <option value="Paired_r">Paired reversed</option>
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parents:
diff changeset
376 <option value="Pastel1_r">Pastel1 reversed</option>
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parents:
diff changeset
377 <option value="Pastel2_r">Pastel2 reversed</option>
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parents:
diff changeset
378 <option value="spring_r">spring reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
379 <option value="summer_r">summer reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
380 <option value="autumn_r">autumn reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
381 <option value="winter_r">winter reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
382 <option value="hot_r">hot reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
383 <option value="coolwarm_r">coolwarm reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
384 <option value="cool_r">cool reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
385 <option value="seismic_r">seismic reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
386 <option value="terrain_r">terrain reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
387 <option value="ocean_r">ocean reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
388 <option value="rainbow_r">rainbow reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
389 <option value="bone_r">bone reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
390 <option value="flag_r">flag reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
391 <option value="prism_r">prism reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
392 <option value="cubehelix_r">cubehelix reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
393 <option value="binary_r">binary reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
394 <option value="pink_r">pink reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
395 <option value="gray_r">gray reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
396 <option value="copper_r">copper reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
397 <option value="BrBG_r">BrBG reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
398 <option value="BuGn_r">BuGn reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
399 <option value="BuPu_r">BuPu reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
400 <option value="GnBu_r">GnBu reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
401 <option value="OrRd_r">OrRd reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
402 <option value="PiYG_r">PiYG reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
403 <option value="PRGn_r">PRGn reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
404 <option value="PuOr_r">PuOr reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
405 <option value="PuRd_r">PuRd reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
406 <option value="PuBu_r">PuBu reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
407 <option value="RdBu_r">RdBu reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
408 <option value="RdGy_r">RdGy reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
409 <option value="RdPu_r">RdPu reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
410 <option value="YlGn_r">YlGn reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
411 <option value="PuBuGn_r">PuBuGn reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
412 <option value="RdYlBu_r">RdYlBu reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
413 <option value="RdYlGn_r">RdYlGn reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
414 <option value="YlGnBu_r">YlGnBu reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
415 <option value="YlOrBr_r">YlOrBr reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
416 <option value="YlOrRd_r">YlOrRd reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
417 <option value="gist_gray_r">gist_gray reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
418 <option value="gist_stern_r">gist_stern reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
419 <option value="gist_earth_r">gist_earth reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
420 <option value="gist_yarg_r">gist_yarg reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
421 <option value="gist_ncar_r">gist_ncar reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
422 <option value="gist_rainbow_r">gist_rainbow reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
423 <option value="gist_heat_r">gist_heat reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
424 <option value="gnuplot_r">gnuplot reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
425 <option value="gnuplot2_r">gnuplot2 reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
426 <option value="CMRmap_r">CMRmap reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
427 <option value="bwr_r">bwr reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
428 <option value="hsv_r">hsv reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
429 <option value="brg_r">brg reversed</option>
d957e25e18a3 Uploaded
bgruening
parents:
diff changeset
430 <option value="jet_r">jet reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
431 <option value="afmhot_r">afmhot reversed</option>
d957e25e18a3 Uploaded
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parents:
diff changeset
432 </param>
d957e25e18a3 Uploaded
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parents:
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433
13
b4c5dd45778a Uploaded
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parents: 12
diff changeset
434 </xml>
0
d957e25e18a3 Uploaded
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parents:
diff changeset
435
d957e25e18a3 Uploaded
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parents:
diff changeset
436 </macros>