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comparison bigwigCompare.xml @ 10:135f3bae5c56 draft

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Uploaded
author bgruening
date Sat, 14 Dec 2013 03:29:29 -0500
parents c53a73b8eef9
children 5ea8782d650c
comparison
equal deleted inserted replaced
9:c53a73b8eef9 10:135f3bae5c56
1 <tool id="deeptools_bigwigCompare" name="bigwigCompare" version="1.0"> 1 <tool id="deeptools_bigwigCompare" name="bigwigCompare" version="1.0.2">
2 <description>normalizes and compares two bigWig files to obtain the ratio, log2ratio or difference</description> 2 <description>normalizes and compares two bigWig files to obtain the ratio, log2ratio or difference</description>
3 <expand macro="requirements"/> 3 <expand macro="requirements"/>
4 <expand macro="stdio" />
4 <macros> 5 <macros>
5 <import>deepTools_macros.xml</import> 6 <import>deepTools_macros.xml</import>
6 </macros> 7 </macros>
7 <command> 8 <command>
8 bigwigCompare 9 bigwigCompare
27 --pseudocount '$advancedOpt.pseudocount' 28 --pseudocount '$advancedOpt.pseudocount'
28 --binSize $advancedOpt.binSize 29 --binSize $advancedOpt.binSize
29 30
30 #end if 31 #end if
31 </command> 32 </command>
32 <stdio>
33 <regex match="Error:" />
34 <regex match="EXception:" />
35 </stdio>
36 <inputs> 33 <inputs>
37 <param name="bigwigFile1" format="bigwig" type="data" label="Treatment bigwig file" /> 34 <param name="bigwigFile1" format="bigwig" type="data" label="Treatment bigwig file" />
38 <param name="bigwigFile2" format="bigwig" type="data" label="bigWig file" /> 35 <param name="bigwigFile2" format="bigwig" type="data" label="bigWig file" />
39 36
40 <param name="comparison_type" type="select" 37 <param name="comparison_type" type="select"