Mercurial > repos > bgruening > deeptools
comparison tool_dependencies.xml @ 6:1ee0b1ecf500 draft
Uploaded
author | bgruening |
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date | Mon, 02 Dec 2013 07:49:06 -0500 |
parents | c54d31467be4 |
children | c53a73b8eef9 |
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5:c54d31467be4 | 6:1ee0b1ecf500 |
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55 </package> | 55 </package> |
56 | 56 |
57 <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a"> | 57 <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a"> |
58 <install version="1.0"> | 58 <install version="1.0"> |
59 <actions> | 59 <actions> |
60 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> | |
60 <!-- populate the environment variables from the dependend repos --> | 61 <!-- populate the environment variables from the dependend repos --> |
61 <action type="set_environment_for_install"> | 62 <action type="set_environment_for_install"> |
62 <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 63 <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
63 <package name="pysam" version="0.7.7" /> | 64 <package name="pysam" version="0.7.7" /> |
64 </repository> | 65 </repository> |
65 </action> | 66 </action> |
66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> | |
67 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action> | 67 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action> |
68 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 68 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
69 <action type="shell_command"> | 69 <action type="shell_command"> |
70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
71 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin | 71 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin |
72 </action> | 72 </action> |
73 | |
74 <action type="set_environment"> | 73 <action type="set_environment"> |
75 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 74 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
76 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 75 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
77 <!-- disable the config file of deepTools --> | 76 <!-- disable the config file of deepTools --> |
78 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable> | 77 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable> |