Mercurial > repos > bgruening > deeptools
comparison tool-data/deepTools_seqs.loc.sample @ 26:2ad3b027dfcd draft
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| author | bgruening |
|---|---|
| date | Thu, 06 Feb 2014 06:40:05 -0500 |
| parents | d957e25e18a3 |
| children |
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| 25:d2898b81b912 | 26:2ad3b027dfcd |
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| 1 #This is a sample file distributed with Galaxy that enables tools | |
| 2 #to use a directory of 2bit genome files for use with deepTools. You will | |
| 3 #need to supply these files and then create a deepTools_seqs.loc file | |
| 4 #similar to this one (store it in this directory) that points to | |
| 5 #the directories in which those files are stored. The deepTools_seqs.loc | |
| 6 #file has this format: | |
| 7 # | |
| 8 #<unique_build_id> <display_name> <file_path> | |
| 9 # | |
| 10 #So, for example, if your deepTools_seqs.loc began like this: | |
| 11 # | |
| 12 #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit | |
| 13 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit | |
| 14 #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit | |
| 15 # | |
| 16 #then your /depot/data2/galaxy/twobit/ directory | |
| 17 #would need to contain the following 2bit files: | |
| 18 # | |
| 19 #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit | |
| 20 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit | |
| 21 #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit | |
| 22 # | |
| 23 #Your deepTools_seqs.loc file should include an entry per line for | |
| 24 #each file you have stored that you want to be available. Note that | |
| 25 #your files should all have the extension '2bit'. | |
| 26 # | |
| 27 #Please note that the <unique_build_id> is also used as "Species name abbreviation". |