Mercurial > repos > bgruening > deeptools

comparison tool_dependencies.xml @ 1:a22ccc261bb3 draft

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author bgruening
date Fri, 15 Nov 2013 07:57:48 -0500
parents d957e25e18a3
children 9441b4e5d2d6
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0:d957e25e18a3 1:a22ccc261bb3
52 </actions> 52 </actions>
53 </install> 53 </install>
54 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> 54 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
55 </package> 55 </package>
56 56
57 <package name="deepTools" version="1.5.1_91b873c095bb4ca44da99e57d8b49784508aa98b"> 57 <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a">
58 <install version="1.0"> 58 <install version="1.0">
59 <actions> 59 <actions>
60 <!-- populate the environment variables from the dependend repos --> 60 <!-- populate the environment variables from the dependend repos -->
61 <action type="set_environment_for_install"> 61 <action type="set_environment_for_install">
62 <repository changeset_revision="f3f4b6121444" name="package_pysam_0_7_5" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 62 <repository changeset_revision="f3f4b6121444" name="package_pysam_0_7_5" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
63 <package name="pysam" version="0.7.5" /> 63 <package name="pysam" version="0.7.5" />
64 </repository> 64 </repository>
65 </action> 65 </action>
66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> 66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
67 <action type="shell_command">git reset --hard 91b873c095bb4ca44da99e57d8b49784508aa98b</action> 67 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action>
68 <action type="make_directory">$INSTALL_DIR/lib/python</action> 68 <action type="make_directory">$INSTALL_DIR/lib/python</action>
69 <action type="shell_command"> 69 <action type="shell_command">
70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
71 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 71 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
72 </action> 72 </action>