Mercurial > repos > bgruening > deeptools

comparison deepTools_macros.xml @ 14:a7ae8ce85f45 draft

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Uploaded
author bgruening
date Mon, 16 Dec 2013 13:10:27 -0500
parents b4c5dd45778a
children b96676609e10
comparison
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13:b4c5dd45778a 14:a7ae8ce85f45
89 help="Label to use in the output. If not given the dataset name will be used instead."/> 89 help="Label to use in the output. If not given the dataset name will be used instead."/>
90 </repeat> 90 </repeat>
91 </xml> 91 </xml>
92 92
93 <token name="@multiple_input_bams@"> 93 <token name="@multiple_input_bams@">
94 #import tempfile
94 #for $i in $input_files: 95 #for $i in $input_files:
95 #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir ) 96 #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir )
96 #set $temp_input_path = $temp_input_handle.name 97 #set $temp_input_path = $temp_input_handle.name
97 #silent $temp_input_handle.close() 98 #silent $temp_input_handle.close()
98 #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path)) 99 #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path))