Mercurial > repos > bgruening > deeptools

comparison deepTools_macros.xml @ 15:b96676609e10 draft

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Uploaded
author bgruening
date Mon, 16 Dec 2013 14:08:15 -0500
parents a7ae8ce85f45
children ef65d6b68ccc
comparison
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14:a7ae8ce85f45 15:b96676609e10
90 </repeat> 90 </repeat>
91 </xml> 91 </xml>
92 92
93 <token name="@multiple_input_bams@"> 93 <token name="@multiple_input_bams@">
94 #import tempfile 94 #import tempfile
95 #set $temp_dir = os.path.abspath(tempfile.mkdtemp())
96 #set files=[]
97 #set labels=[]
95 #for $i in $input_files: 98 #for $i in $input_files:
96 #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir ) 99 #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir )
97 #set $temp_input_path = $temp_input_handle.name 100 #set $temp_input_path = $temp_input_handle.name
98 #silent $temp_input_handle.close() 101 #silent $temp_input_handle.close()
99 #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path)) 102 #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path))