Mercurial > repos > bgruening > deeptools

comparison bamCorrelate.xml @ 11:baf4283e2d7f draft

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Uploaded
author bgruening
date Sat, 14 Dec 2013 07:00:55 -0500
parents 135f3bae5c56
children 16310f8b24d5
comparison
equal deleted inserted replaced
10:135f3bae5c56 11:baf4283e2d7f
105 <option value="no" selected="true">no</option> 105 <option value="no" selected="true">no</option>
106 <option value="yes">yes</option> 106 <option value="yes">yes</option>
107 </param> 107 </param>
108 <when value="no" /> 108 <when value="no" />
109 <when value="yes"> 109 <when value="yes">
110 <param name="outFileFormat" type="select" label="Image file format"> 110 <expand macro="input_image_file_format"/>
111 <option value="png" selected="true">png</option>
112 <option value="pdf">pdf</option>
113 <option value="svg">svg</option>
114 <option value="eps">eps</option>
115 <option value="emf">emf</option>
116 </param>
117 <param name="saveRawCounts" type="boolean" label="Save the bin counts"/> 111 <param name="saveRawCounts" type="boolean" label="Save the bin counts"/>
118 <param name="saveCorMatrix" type="boolean" label="Save the correlation matrix"/> 112 <param name="saveCorMatrix" type="boolean" label="Save the correlation matrix"/>
119 </when> 113 </when>
120 </conditional> 114 </conditional>
121 115
122 </inputs> 116 </inputs>
123 <outputs> 117 <outputs>
124 <data format="png" name="outFileName"> 118 <expand macro="output_image_file_format" />
125 <change_format>
126 <when input="output.outFileFormat" value="pdf" format="pdf" />
127 <when input="output.outFileFormat" value="svg" format="svg" />
128 <when input="output.outFileFormat" value="eps" format="eps" />
129 <when input="output.outFileFormat" value="emf" format="emf" />
130 </change_format>
131 </data>
132 <data format="tabular" name="outFileRawCounts" label="${tool.name} on ${on_string}: bin counts"> 119 <data format="tabular" name="outFileRawCounts" label="${tool.name} on ${on_string}: bin counts">
133 <filter>(outputOpt['showOutputOpt'] == 'yes' and outputOpt['saveRawCounts'] == True)</filter> 120 <filter>(outputOpt['showOutputOpt'] == 'yes' and outputOpt['saveRawCounts'] == True)</filter>
134 </data> 121 </data>
135 <data format="tabular" name="outFileCorMatrix" label="${tool.name} on ${on_string}: correlation matrix"> 122 <data format="tabular" name="outFileCorMatrix" label="${tool.name} on ${on_string}: correlation matrix">
136 <filter>(outputOpt['showOutputOpt'] == 'yes' and outputOpt['saveCorMatrix'] == True)</filter> 123 <filter>(outputOpt['showOutputOpt'] == 'yes' and outputOpt['saveCorMatrix'] == True)</filter>