Mercurial > repos > bgruening > deeptools

comparison deepTools_macros.xml @ 11:baf4283e2d7f draft

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Uploaded
author bgruening
date Sat, 14 Dec 2013 07:00:55 -0500
parents 135f3bae5c56
children aea72b24dea0
comparison
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10:135f3bae5c56 11:baf4283e2d7f
170 <option value="no" selected="true">no</option> 170 <option value="no" selected="true">no</option>
171 <option value="yes">yes</option> 171 <option value="yes">yes</option>
172 </param> 172 </param>
173 <when value="no" /> 173 <when value="no" />
174 <when value="yes"> 174 <when value="yes">
175 <param name="outFileFormat" type="select" label="Image file format"> 175 <yield />
176 <option value="png" selected="true">png</option>
177 <option value="pdf">pdf</option>
178 <option value="svg">svg</option>
179 <option value="eps">eps</option>
180 <option value="emf">emf</option>
181 </param>
182 <param name="saveData" type="boolean" label="Save the data underlying data for the average profile"/> 176 <param name="saveData" type="boolean" label="Save the data underlying data for the average profile"/>
183 <param name="saveMatrix" type="boolean" label="Save the the matrix of values underlying the heatmap"/> 177 <param name="saveMatrix" type="boolean" label="Save the the matrix of values underlying the heatmap"/>
184 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/> 178 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/>
185 </when> 179 </when>
186 </conditional> 180 </conditional>
187 </macro> 181 </macro>
188 182
189 <macro name="output_graphic_outputs"> 183 <macro name="input_image_file_format">
184 <param name="outFileFormat" type="select" label="Image file format">
185 <option value="png" selected="true">png</option>
186 <option value="pdf">pdf</option>
187 <option value="svg">svg</option>
188 <option value="eps">eps</option>
189 <option value="emf">emf</option>
190 </param>
191 </macro>
192
193 <macro name="output_image_file_format">
190 <data format="png" name="outFileName" label="${tool.name} image"> 194 <data format="png" name="outFileName" label="${tool.name} image">
191 <change_format> 195 <change_format>
192 <when input="output.outFileFormat" value="pdf" format="pdf" /> 196 <when input="output.outFileFormat" value="pdf" format="pdf" />
193 <when input="output.outFileFormat" value="svg" format="svg" /> 197 <when input="output.outFileFormat" value="svg" format="svg" />
194 <when input="output.outFileFormat" value="eps" format="eps" /> 198 <when input="output.outFileFormat" value="eps" format="eps" />
195 <when input="output.outFileFormat" value="emf" format="emf" /> 199 <when input="output.outFileFormat" value="emf" format="emf" />
196 </change_format> 200 </change_format>
197 </data> 201 </data>
202 </macro>
203
204 <macro name="output_graphic_outputs">
205 <yield />
198 <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column"> 206 <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column">
199 <filter> 207 <filter>
200 (( 208 ((
201 output['showOutputSettings'] == 'yes' and 209 output['showOutputSettings'] == 'yes' and
202 output['saveData'] is True 210 output['saveData'] is True