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comparison heatmapper.xml @ 11:baf4283e2d7f draft

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Uploaded
author bgruening
date Sat, 14 Dec 2013 07:00:55 -0500
parents 135f3bae5c56
children aea72b24dea0
comparison
equal deleted inserted replaced
10:135f3bae5c56 11:baf4283e2d7f
82 #end if 82 #end if
83 </command> 83 </command>
84 <inputs> 84 <inputs>
85 <param name="matrixFile" format="bgzip" type="data" label="Matrix file from the computeMatrix tool"/> 85 <param name="matrixFile" format="bgzip" type="data" label="Matrix file from the computeMatrix tool"/>
86 86
87 <expand macro="graphic_output_settings" /> 87 <expand macro="graphic_output_settings">
88 <expand macro="input_image_file_format" />
89 </expand>
88 90
89 <conditional name="advancedOpt" > 91 <conditional name="advancedOpt" >
90 <param name="showAdvancedOpt" type="select" label="Show advanced options" > 92 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
91 <option value="no" selected="true">no</option> 93 <option value="no" selected="true">no</option>
92 <option value="yes">yes</option> 94 <option value="yes">yes</option>
151 <param name="onePlotPerGroup" type="boolean" truevalue="--onePlotPerGroup" falsevalue="" label="Do one plot per group" help="When the region file contains groups separated by &quot;#&quot;, the default is to plot the averages for the distinct plots in one plot. If this option is set, each group will get its own plot, stacked on top of each other."/> 153 <param name="onePlotPerGroup" type="boolean" truevalue="--onePlotPerGroup" falsevalue="" label="Do one plot per group" help="When the region file contains groups separated by &quot;#&quot;, the default is to plot the averages for the distinct plots in one plot. If this option is set, each group will get its own plot, stacked on top of each other."/>
152 </when> 154 </when>
153 </conditional> 155 </conditional>
154 </inputs> 156 </inputs>
155 <outputs> 157 <outputs>
156 <data format="png" name="outFileName" label="${tool.name} image"> 158 <expand macro="output_graphic_outputs">
157 <change_format> 159 <expand macro="output_image_file_format" />
158 <when input="output.outFileFormat" value="pdf" format="pdf" /> 160 </expand>
159 <when input="output.outFileFormat" value="svg" format="svg" />
160 <when input="output.outFileFormat" value="eps" format="eps" />
161 <when input="output.outFileFormat" value="emf" format="emf" />
162 </change_format>
163 </data>
164 <expand macro="output_graphic_outputs" />
165 </outputs> 161 </outputs>
166 <tests> 162 <tests>
167 <test> 163 <test>
168 <param name="matrixFile" value="master.mat.gz" ftype="bgzip" /> 164 <param name="matrixFile" value="master.mat.gz" ftype="bgzip" />
169 <output name="outFileName" file="master.png" ftype="png" compare="sim_size" delta="100" /> 165 <output name="outFileName" file="master.png" ftype="png" compare="sim_size" delta="100" />