Mercurial > repos > bgruening > deeptools

comparison tool_dependencies.xml @ 5:c54d31467be4 draft

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Uploaded
author bgruening
date Fri, 29 Nov 2013 08:59:04 -0500
parents ac935c35437a
children 1ee0b1ecf500
comparison
equal deleted inserted replaced
4:ac935c35437a 5:c54d31467be4
2 <tool_dependency> 2 <tool_dependency>
3 <package name="samtools" version="0.1.19"> 3 <package name="samtools" version="0.1.19">
4 <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="numpy" version="1.7.1"> 6 <package name="numpy" version="1.7.1">
7 <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="796c0081adad" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="matplotlib" version="1.2.1"> 9 <package name="matplotlib" version="1.2.1">
10 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="scipy" version="0.12.0"> 12 <package name="scipy" version="0.12.0">
13 <repository changeset_revision="303d29ec30e5" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="d277bf006c3e" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="pysam" version="0.7.6"> 15 <package name="pysam" version="0.7.7">
16 <repository changeset_revision="9d817cc2c290" name="package_pysam_0_7_6" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 18
19 <package name="ucsc_tools" version="0.1"> 19 <package name="ucsc_tools" version="0.1">
20 <install version="1.0"> 20 <install version="1.0">
21 <actions> 21 <actions>
57 <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a"> 57 <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a">
58 <install version="1.0"> 58 <install version="1.0">
59 <actions> 59 <actions>
60 <!-- populate the environment variables from the dependend repos --> 60 <!-- populate the environment variables from the dependend repos -->
61 <action type="set_environment_for_install"> 61 <action type="set_environment_for_install">
62 <repository changeset_revision="f3f4b6121444" name="package_pysam_0_7_5" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 62 <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
63 <package name="pysam" version="0.7.5" /> 63 <package name="pysam" version="0.7.7" />
64 </repository> 64 </repository>
65 </action> 65 </action>
66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> 66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
67 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action> 67 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action>
68 <action type="make_directory">$INSTALL_DIR/lib/python</action> 68 <action type="make_directory">$INSTALL_DIR/lib/python</action>