Mercurial > repos > bgruening > deeptools

diff bamCorrelate.xml @ 5:c54d31467be4 draft

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Uploaded
author bgruening
date Fri, 29 Nov 2013 08:59:04 -0500
parents 9441b4e5d2d6
children 135f3bae5c56
line wrap: on
line diff
--- a/bamCorrelate.xml	Sat Nov 16 07:54:13 2013 -0500
+++ b/bamCorrelate.xml	Fri Nov 29 08:59:04 2013 -0500
@@ -15,14 +15,7 @@
 
         bamCorrelate
 
-        #if $mode.modeOpt == "bins":
-            bins
-            --binSize '$mode.binSize'
-            --numberOfSamples '$mode.numberOfSamples'
-        #else:
-            BED-file
-            --BED $mode.region_file
-        #end if
+        $mode.modeOpt
 
         @THREADS@
 
@@ -40,6 +33,13 @@
             --outFileCorMatrix '$outFileCorMatrix'
         #end if
 
+        #if $mode.modeOpt == "bins":
+            --binSize '$mode.binSize'
+            --numberOfSamples '$mode.numberOfSamples'
+        #else:
+            --BED $mode.region_file
+        #end if
+
         ## options available in both modes
         #if $mode.advancedOpt.showAdvancedOpt == "yes":