Mercurial > repos > bgruening > deeptools
diff Galaxy-Workflow-2_BAM_files_--_(clustered)_Heatmap_of_read_coverages.ga @ 25:d2898b81b912 draft
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author | bgruening |
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date | Tue, 04 Feb 2014 13:45:17 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-2_BAM_files_--_(clustered)_Heatmap_of_read_coverages.ga Tue Feb 04 13:45:17 2014 -0500 @@ -0,0 +1,293 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "Normalizes 2 BAM files to each other (log2ratio of BAM-file 1 / BAM file 2). Then generates a heatmap for regions supplied in 1 BED file (clustering possible). Output: bigWig file, computeMatrix table, heatmapper image", + "format-version": "0.1", + "name": "2 BAM files -->(clustered) Heatmap of read coverages", + "steps": { + "0": { + "annotation": "sorted BAM file", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "sorted BAM file", + "name": "file 1 of mapped reads, e.g. treated sample" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 257.5, + "top": 480 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"file 1 of mapped reads, e.g. treated sample\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "BED or INTERVAL file of genome regions to plot the read coverage for", + "id": 1, + "input_connections": {}, + "inputs": [ + { + "description": "BED or INTERVAL file of genome regions to plot the read coverage for", + "name": "regions" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 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