# HG changeset patch # User bgruening # Date 1391460446 18000 # Node ID 69ff16ba27bd07e350c4ed7651b0170a0fa17790 # Parent 01bc5ce134981387c223798cd69e29d3f1d4da90 Uploaded diff -r 01bc5ce13498 -r 69ff16ba27bd bamCompare.xml --- a/bamCompare.xml Mon Feb 03 13:56:24 2014 -0500 +++ b/bamCompare.xml Mon Feb 03 15:47:26 2014 -0500 @@ -47,7 +47,7 @@ #end if #end if - #if str(region).strip() != '': + #if str($region).strip() != '': --region 'region' #end if diff -r 01bc5ce13498 -r 69ff16ba27bd bamCoverage.xml --- a/bamCoverage.xml Mon Feb 03 13:56:24 2014 -0500 +++ b/bamCoverage.xml Mon Feb 03 15:47:26 2014 -0500 @@ -31,7 +31,7 @@ --scaleFactor $scaling.scaleFactor #end if - #if str(region).strip() != '': + #if str($region).strip() != '': --region 'region' #end if diff -r 01bc5ce13498 -r 69ff16ba27bd bamFingerprint.xml --- a/bamFingerprint.xml Mon Feb 03 13:56:24 2014 -0500 +++ b/bamFingerprint.xml Mon Feb 03 15:47:26 2014 -0500 @@ -30,7 +30,7 @@ --plotFileFormat 'png' #end if - #if str(region).strip() != '': + #if str($region).strip() != '': --region 'region' #end if diff -r 01bc5ce13498 -r 69ff16ba27bd computeGCBias.xml --- a/computeGCBias.xml Mon Feb 03 13:56:24 2014 -0500 +++ b/computeGCBias.xml Mon Feb 03 15:47:26 2014 -0500 @@ -25,7 +25,7 @@ --effectiveGenomeSize $effectiveGenomeSize.effectiveGenomeSize_opt #end if - #if str(region).strip() != '': + #if str($region).strip() != '': --region 'region' #end if diff -r 01bc5ce13498 -r 69ff16ba27bd correctGCBias.xml --- a/correctGCBias.xml Mon Feb 03 13:56:24 2014 -0500 +++ b/correctGCBias.xml Mon Feb 03 15:47:26 2014 -0500 @@ -33,7 +33,7 @@ --effectiveGenomeSize $effectiveGenomeSize.effectiveGenomeSize_opt #end if - #if str(region).strip() != '': + #if str($region).strip() != '': --region 'region' #end if