Mercurial > repos > bgruening > deeptools

changeset 2:b5da81864541 draft

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Uploaded
author bgruening
date Fri, 15 Nov 2013 11:02:32 -0500
parents a22ccc261bb3
children 9441b4e5d2d6
files bigwigCompare.xml deepTools_macros.xml
diffstat 2 files changed, 3 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/bigwigCompare.xml	Fri Nov 15 07:57:48 2013 -0500
+++ b/bigwigCompare.xml	Fri Nov 15 11:02:32 2013 -0500
@@ -30,8 +30,6 @@
         #end if
     </command>
     <stdio>
-        <exit_code range="1:" />
-        <exit_code range=":-1" />
         <regex match="Error:" />
         <regex match="EXception:" />
     </stdio>
--- a/deepTools_macros.xml	Fri Nov 15 07:57:48 2013 -0500
+++ b/deepTools_macros.xml	Fri Nov 15 11:02:32 2013 -0500
@@ -40,14 +40,14 @@
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
     <macro name="requirements">
         <requirements>
+            <requirement type="package" >samtools</requirement>
+            <requirement type="package" >deepTools</requirement>
+            <requirement type="package" >ucsc_tools</requirement>
             <requirement type="package" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a">deepTools</requirement>
             <requirement type="package" version="0.1">ucsc_tools</requirement>
             <requirement type="package" version="1.7.1">numpy</requirement>
             <requirement type="package" version="0.7.6">pysam</requirement>
             <requirement type="package" version="0.1.19">samtools</requirement>
-            <requirement type="package" >samtools</requirement>
-            <requirement type="package" >deepTools</requirement>
-            <requirement type="package" >ucsc_tools</requirement>
             <yield />
         </requirements>
         </macro>