Mercurial > repos > bgruening > deeptools_alignmentsieve

comparison alignmentSieve.xml @ 11:d8c919d26d0e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit e7e3025eb4fffe5deb34c12a6d402d79241d9ed5
author bgruening
date Fri, 19 May 2023 08:34:00 +0000
parents ea8efdcf151f
children 2b1413e30889
comparison
equal deleted inserted replaced
10:e5a296ce8fbb 11:d8c919d26d0e
134 <tests> 134 <tests>
135 <test> 135 <test>
136 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> 136 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
137 <param name="minMappingQuality" value="10" /> 137 <param name="minMappingQuality" value="10" />
138 <param name="filterMetrics" value="True" /> 138 <param name="filterMetrics" value="True" />
139 <output name="outFile" file="alignmentSieve.bam" ftype="bam" /> 139 <output name="outFile" file="alignmentSieve.bam" ftype="bam" lines_diff="1" />
140 <output name="filterMetricsFile" file="alignmentSieve.txt" ftype="tabular" /> 140 <output name="filterMetricsFile" file="alignmentSieve.txt" ftype="tabular" />
141 </test> 141 </test>
142 <test> 142 <test>
143 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> 143 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
144 <param name="minMappingQuality" value="10" /> 144 <param name="minMappingQuality" value="10" />
148 </test> 148 </test>
149 <test> 149 <test>
150 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> 150 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
151 <param name="minMappingQuality" value="10" /> 151 <param name="minMappingQuality" value="10" />
152 <param name="shift" value="1 -2 3 -4" /> 152 <param name="shift" value="1 -2 3 -4" />
153 <output name="outFile" file="alignmentSieve2.bam" ftype="bam" /> 153 <output name="outFile" file="alignmentSieve2.bam" ftype="bam" lines_diff="2" />
154 </test> 154 </test>
155 <test> 155 <test>
156 <param name="bamfile" value="paired_chr2L.cram" ftype="cram" /> 156 <param name="bamfile" value="paired_chr2L.cram" ftype="cram" />
157 <param name="minMappingQuality" value="10" /> 157 <param name="minMappingQuality" value="10" />
158 <param name="shift" value="1 -2 3 -4" /> 158 <param name="shift" value="1 -2 3 -4" />
159 <output name="outFile" file="alignmentSieve3.bam" ftype="bam" /> 159 <output name="outFile" file="alignmentSieve3.bam" ftype="bam" lines_diff="2" />
160 </test> 160 </test>
161 </tests> 161 </tests>
162 162
163 <help> 163 <help>
164 <![CDATA[ 164 <![CDATA[