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annotate tool_dependencies.xml.orig @ 2:075ac65129b5 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 7150f0c106abd56920767518cc331ef6e4e7f439
author bgruening
date Thu, 18 Feb 2016 11:53:00 -0500
parents e237a134059a
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.9">
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4 <repository name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" />
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5 </package>
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6 <package name="pybigwig" version="0.2.4">
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7 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc" prior_installation_required="True"/>
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8 </package>
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9 <package name="matplotlib" version="1.4">
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10 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" />
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11 </package>
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12 <package name="scipy" version="0.14">
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13 <repository name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" />
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14 </package>
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15 <<<<<<< HEAD
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16 <package name="deepTools" version="2.0.1">
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17 <repository name="package_python_2_7_deeptools_2_0_1" owner="iuc"/>
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18 =======
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19 <package name="pysam" version="0.8.3">
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20 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" />
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21 </package>
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22 <package name="bx-python" version="0.7.2">
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23 <repository name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" />
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24 </package>
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25 <package name="python" version="2.7.10">
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26 <repository name="package_python_2_7_10" owner="iuc" prior_installation_required="True" />
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27 >>>>>>> d56067f86089e75354a2fad266002db3730766d9
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28 </package>
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29 <package name="deepTools" version="2.1.0">
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30 <install version="1.0">
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31 <actions>
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32 <action type="setup_python_environment">
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33 <repository name="package_python_2_7_10" owner="iuc">
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34 <package name="python" version="2.7.10" />
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35 </repository>
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36 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc">
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37 <package name="pysam" version="0.8.3" />
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38 </repository>
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39 <repository name="package_python_2_7_numpy_1_9" owner="iuc">
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40 <package name="numpy" version="1.9" />
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41 </repository>
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42 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc">
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43 <package name="matplotlib" version="1.4" />
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44 </repository>
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45 <repository name="package_python_2_7_scipy_0_14" owner="iuc">
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46 <package name="scipy" version="0.14" />
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47 </repository>
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48 <repository name="package_python_2_7_bx_python_0_7" owner="iuc">
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49 <package name="bx-python" version="0.7.2" />
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50 </repository>
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51 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc">
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52 <package name="pybigwig" version="0.2.4" />
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53 </repository>
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54 <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package>
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55 </action>
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56
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57 <action type="set_environment">
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58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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59 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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60 <environment_variable name="DEEPTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
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61 <environment_variable name="DEEPTOOLS_PYTHONPATH" action="set_to">$INSTALL_DIR</environment_variable>
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62 <environment_variable name="DEEPTOOLS_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
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63 <!-- libpng lib path -->
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64 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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65 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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66 <!-- disable the config file of deepTools -->
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67 <environment_variable name="DEEP_TOOLS_NO_CONFIG" action="set_to">TRUE</environment_variable>
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68 </action>
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69 </actions>
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70 </install>
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71 <readme>
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72 Installation of deepTools from Fidel Ramirez.
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73 https://github.com/fidelram/deepTools
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74 </readme>
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75 </package>
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76 </tool_dependency>