Mercurial > repos > bgruening > deeptools_bam_compare

comparison bamCompare.xml @ 3:2f27bfe8b570 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c
author bgruening
date Wed, 09 Mar 2016 18:30:04 -0500
parents e237a134059a
children 8e41fe2f3661
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2:075ac65129b5 3:2f27bfe8b570
68 #end if 68 #end if
69 ]]> 69 ]]>
70 </command> 70 </command>
71 <inputs> 71 <inputs>
72 <param argument="--bamFile1" format="bam" type="data" label="First BAM file (e.g. treated sample)" 72 <param argument="--bamFile1" format="bam" type="data" label="First BAM file (e.g. treated sample)"
73 help="The BAM file must be sorted."/> 73 help=""/>
74 <param argument="--bamFile2" format="bam" type="data" label="Second BAM file (e.g. control sample)" 74 <param argument="--bamFile2" format="bam" type="data" label="Second BAM file (e.g. control sample)"
75 help="The BAM file must be sorted."/> 75 help=""/>
76 76
77 <param argument="--binSize" type="integer" value="50" min="1" 77 <param argument="--binSize" type="integer" value="50" min="1"
78 label="Bin size in bases" 78 label="Bin size in bases"
79 help="The genome will be divided into bins of the specified size. For each bin, the overlaping number of fragments (or reads) will be reported. 79 help="The genome will be divided into bins of the specified size. For each bin, the overlaping number of fragments (or reads) will be reported.
80 If only half a fragment overlaps then this fraction will be reported."/> 80 If only half a fragment overlaps then this fraction will be reported."/>