Mercurial > repos > bgruening > deeptools_bam_compare
diff deepTools_macros.xml @ 11:8f2a1286b61c draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 999ec5d9b5882702497d8117a7d26536a67e19ca
author | bgruening |
---|---|
date | Tue, 24 Jan 2017 04:59:05 -0500 |
parents | 9cc3a577f80d |
children | bda8b9986fae |
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--- a/deepTools_macros.xml Mon Dec 05 08:12:20 2016 -0500 +++ b/deepTools_macros.xml Tue Jan 24 04:59:05 2017 -0500 @@ -98,11 +98,11 @@ </xml> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">2.4.1</token> + <token name="@WRAPPER_VERSION@">2.4.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="2.7.10">python</requirement> - <requirement type="package" version="2.4.1">deeptools</requirement> + <requirement type="package" version="2.4.2">deeptools</requirement> <yield /> </requirements> <expand macro="stdio" /> @@ -299,7 +299,7 @@ <param argument="--sortRegions" type="select" label="Sort regions" help="Whether the heatmap should present the regions sorted. The default is to sort in descending order based on the mean value per region."> <option value="no">no ordering</option> - <option value="descend">descending order</option> + <option value="descend" selected="true">descending order</option> <option value="ascend">ascending order</option> </param> </xml> @@ -450,10 +450,10 @@ #end for #else: #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): - ln -s "${f.bamfile}" "./${counter}.bam" && - ln -s "${f.bamfile.metadata.bam_index}" "./${counter}.bam.bai" && + ln -s "${f.bamfiles}" "./${counter}.bam" && + ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" && #silent $files.append('%s.bam' % $counter) - #silent $labels.append("'%s'" % ($f.bamfile.display_name)) + #silent $labels.append("'%s'" % ($f.bamfiles.display_name)) #end for #end if ]]> @@ -471,9 +471,9 @@ #end for #else: #for $counter, $f in enumerate($multibigwig_conditional.multibigwig_repeats): - ln -s "${f.bigwig}" "${counter}.bw" && + ln -s "${f.bigwigfiles}" "${counter}.bw" && #silent $files.append('%s.bw' % $counter) - #silent $labels.append("'%s'" % ($f.bigwig.display_name)) + #silent $labels.append("'%s'" % ($f.bigwigfiles.display_name)) #end for #end if ]]>