<?xml version='1.0' encoding='utf-8'?>
<tool_dependency>
    <package name="numpy" version="1.9">
        <repository name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="pybigwig" version="0.2.4">
        <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc" prior_installation_required="True"/>
    </package>
    <package name="matplotlib" version="1.4">
        <repository name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="scipy" version="0.14">
        <repository name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" />
    </package>
<<<<<<< HEAD
    <package name="deepTools" version="2.0.1">
        <repository name="package_python_2_7_deeptools_2_0_1" owner="iuc"/>
=======
    <package name="pysam" version="0.8.3">
        <repository name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="bx-python" version="0.7.2">
        <repository name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="python" version="2.7.10">
        <repository name="package_python_2_7_10" owner="iuc" prior_installation_required="True" />
>>>>>>> d56067f86089e75354a2fad266002db3730766d9
    </package>
    <package name="deepTools" version="2.1.0">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository name="package_python_2_7_10" owner="iuc">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <repository name="package_python_2_7_pysam_0_8_3" owner="iuc">
                        <package name="pysam" version="0.8.3" />
                    </repository>
                    <repository name="package_python_2_7_numpy_1_9" owner="iuc">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <repository name="package_python_2_7_matplotlib_1_4" owner="iuc">
                        <package name="matplotlib" version="1.4" />
                    </repository>
                    <repository name="package_python_2_7_scipy_0_14" owner="iuc">
                        <package name="scipy" version="0.14" />
                    </repository>
                    <repository name="package_python_2_7_bx_python_0_7" owner="iuc">
                        <package name="bx-python" version="0.7.2" />
                    </repository>
                    <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc">
                        <package name="pybigwig" version="0.2.4" />
                    </repository>
                    <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package>
                </action>

                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="DEEPTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="DEEPTOOLS_PYTHONPATH" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="DEEPTOOLS_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
                    <!-- libpng lib path -->
                    <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <!-- disable the config file of deepTools -->
                    <environment_variable name="DEEP_TOOLS_NO_CONFIG" action="set_to">TRUE</environment_variable>
                </action>
             </actions>
         </install>
         <readme>
            Installation of deepTools from Fidel Ramirez.
            https://github.com/fidelram/deepTools
         </readme>
     </package>
</tool_dependency>