# HG changeset patch # User bgruening # Date 1522940144 14400 # Node ID 439e75416e1a77c7b3c9a9fada8f1b5360ed3dcf # Parent eb9fcfcd44a07bdc9f6149f612f4c758183837cb planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754 diff -r eb9fcfcd44a0 -r 439e75416e1a deepTools_macros.xml --- a/deepTools_macros.xml Fri Mar 02 16:10:01 2018 -0500 +++ b/deepTools_macros.xml Thu Apr 05 10:55:44 2018 -0400 @@ -1,10 +1,10 @@ --numberOfProcessors "\${GALAXY_SLOTS:-4}" - 3.0.1 + 3.0.2 - deeptools + deeptools samtools @@ -118,6 +118,7 @@ + @@ -443,7 +444,7 @@ #if $multibam_conditional.orderMatters == "No": #for $counter, $bamfile in enumerate($multibam_conditional.bamfiles): #set identifier = re.sub('[^\.\s\w\-]', '_', str($bamfile.element_identifier)) - ln -s "${bamfile}" "./${counter}.bam" && + ln -s '${bamfile}' './${counter}.bam' && #if $bamfile.ext == 'bam': ln -s '${bamfile.metadata.bam_index}' './${counter}.bam.bai' && #else: @@ -455,7 +456,7 @@ #else: #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier)) - ln -s "${f.bamfiles}" "./${counter}.bam" && + ln -s '${f.bamfiles}' './${counter}.bam' && #if $f.bamfiles.ext == 'bam': ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' && #else: @@ -476,14 +477,14 @@ #if $multibigwig_conditional.orderMatters == "No": #for $counter, $bigwig in enumerate($multibigwig_conditional.bigwigfiles): #set identifier = re.sub('[^\.\s\w\-]', '_', str($bigwig.element_identifier)) - ln -f -s "${bigwig}" "${identifier}_${counter}.bw" && + ln -f -s '${bigwig}' '${identifier}_${counter}.bw' && #silent $files.append("'%s_%s.bw'" % ($identifier, $counter)) #silent $labels.append("'%s'" % $identifier) #end for #else: #for $counter, $f in enumerate($multibigwig_conditional.multibigwig_repeats): #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bigwigfiles.element_identifier)) - ln -f -s "${f.bigwigfiles}" "${identifier}_${counter}.bw" && + ln -f -s '${f.bigwigfiles}' '${identifier}_${counter}.bw' && #silent $files.append("'%s_%s.bw'" % ($identifier, $counter)) #silent $labels.append("'%s'" % $identifier) #end for @@ -556,7 +557,7 @@ #if $source.ref_source=="history": --genome $source.input1 #else: - --genome "$source.input1_2bit.fields.path" + --genome '$source.input1_2bit.fields.path' #end if diff -r eb9fcfcd44a0 -r 439e75416e1a test-data/multiBamSummary_result1.npz Binary file test-data/multiBamSummary_result1.npz has changed diff -r eb9fcfcd44a0 -r 439e75416e1a test-data/multiBamSummary_result2.npz Binary file test-data/multiBamSummary_result2.npz has changed