Mercurial > repos > bgruening > deeptools_bam_compare
changeset 24:5f6d123679f4 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
| author | bgruening |
|---|---|
| date | Tue, 02 Apr 2019 08:16:32 -0400 |
| parents | c09c23eaf116 |
| children | 268e91e540ee |
| files | bamCompare.xml deepTools_macros.xml |
| diffstat | 2 files changed, 11 insertions(+), 7 deletions(-) [+] |
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--- a/bamCompare.xml Wed Feb 20 08:00:54 2019 -0500 +++ b/bamCompare.xml Tue Apr 02 08:16:32 2019 -0400 @@ -164,11 +164,7 @@ <expand macro="read_processing_options" /> <expand macro="skipNAs" /> - <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage" - help="Skip bins where BOTH files lack coverage."> - <option value="" selected="true">No</option> - <option value="--skipZeroOverZero">Yes, skip them.</option> - </param> + <expand macro="skipZeroOverZero" /> <param argument="--ignoreForNormalization" type="text" value="" size="50" label="regions that should be excluded for calculating the scaling factor"
--- a/deepTools_macros.xml Wed Feb 20 08:00:54 2019 -0500 +++ b/deepTools_macros.xml Tue Apr 02 08:16:32 2019 -0400 @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.2.0.0</token> + <token name="@WRAPPER_VERSION@">3.2.1.0</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.2.0">deeptools</requirement> + <requirement type="package" version="3.2.1">deeptools</requirement> <requirement type="package" version="1.9">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -650,6 +650,14 @@ (default: False)" /> </xml> + <xml name="skipZeroOverZero"> + <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage" + help="Skip bins where BOTH files lack coverage."> + <option value="" selected="true">No</option> + <option value="--skipZeroOverZero">Yes, skip them.</option> + </param> + </xml> + <xml name="exactScaling"> <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" label="Compute an exact scaling factor"