Mercurial > repos > bgruening > deeptools_bam_coverage

comparison deepTools_macros.xml @ 24:0e143b4c3987 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
author bgruening
date Tue, 02 Apr 2019 08:19:06 -0400
parents fe7cc56090ea
children 7a7fd0f5f15d
comparison
equal deleted inserted replaced
23:fe7cc56090ea 24:0e143b4c3987
1 <macros> 1 <macros>
2 2
3 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> 3 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
4 <token name="@WRAPPER_VERSION@">3.2.0.0</token> 4 <token name="@WRAPPER_VERSION@">3.2.1.0</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="3.2.0">deeptools</requirement> 7 <requirement type="package" version="3.2.1">deeptools</requirement>
8 <requirement type="package" version="1.9">samtools</requirement> 8 <requirement type="package" version="1.9">samtools</requirement>
9 </requirements> 9 </requirements>
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 <version_command>@BINARY@ --version</version_command> 11 <version_command>@BINARY@ --version</version_command>
12 </xml> 12 </xml>
646 regions as having a value of zero. The decision to 646 regions as having a value of zero. The decision to
647 skip non-covered regions depends on the interpretation 647 skip non-covered regions depends on the interpretation
648 of the data. Non-covered regions may represent, for 648 of the data. Non-covered regions may represent, for
649 example, repetitive regions that should be ignored. 649 example, repetitive regions that should be ignored.
650 (default: False)" /> 650 (default: False)" />
651 </xml>
652
653 <xml name="skipZeroOverZero">
654 <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
655 help="Skip bins where BOTH files lack coverage.">
656 <option value="" selected="true">No</option>
657 <option value="--skipZeroOverZero">Yes, skip them.</option>
658 </param>
651 </xml> 659 </xml>
652 660
653 <xml name="exactScaling"> 661 <xml name="exactScaling">
654 <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" 662 <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False"
655 label="Compute an exact scaling factor" 663 label="Compute an exact scaling factor"