Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize

comparison tool_dependencies.xml.orig @ 1:011ea45dda07 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
author bgruening
date Mon, 15 Feb 2016 10:25:00 -0500
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0:bb2b0ad44c0e 1:011ea45dda07
1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="numpy" version="1.9">
4 <repository name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" />
5 </package>
6 <package name="pybigwig" version="0.2.4">
7 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc" prior_installation_required="True"/>
8 </package>
9 <package name="matplotlib" version="1.4">
10 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" />
11 </package>
12 <package name="scipy" version="0.14">
13 <repository name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" />
14 </package>
15 <<<<<<< HEAD
16 <package name="deepTools" version="2.0.1">
17 <repository name="package_python_2_7_deeptools_2_0_1" owner="iuc"/>
18 =======
19 <package name="pysam" version="0.8.3">
20 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" />
21 </package>
22 <package name="bx-python" version="0.7.2">
23 <repository name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" />
24 </package>
25 <package name="python" version="2.7.10">
26 <repository name="package_python_2_7_10" owner="iuc" prior_installation_required="True" />
27 >>>>>>> d56067f86089e75354a2fad266002db3730766d9
28 </package>
29 <package name="deepTools" version="2.1.0">
30 <install version="1.0">
31 <actions>
32 <action type="setup_python_environment">
33 <repository name="package_python_2_7_10" owner="iuc">
34 <package name="python" version="2.7.10" />
35 </repository>
36 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc">
37 <package name="pysam" version="0.8.3" />
38 </repository>
39 <repository name="package_python_2_7_numpy_1_9" owner="iuc">
40 <package name="numpy" version="1.9" />
41 </repository>
42 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc">
43 <package name="matplotlib" version="1.4" />
44 </repository>
45 <repository name="package_python_2_7_scipy_0_14" owner="iuc">
46 <package name="scipy" version="0.14" />
47 </repository>
48 <repository name="package_python_2_7_bx_python_0_7" owner="iuc">
49 <package name="bx-python" version="0.7.2" />
50 </repository>
51 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc">
52 <package name="pybigwig" version="0.2.4" />
53 </repository>
54 <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package>
55 </action>
56
57 <action type="set_environment">
58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
59 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable>
60 <environment_variable name="DEEPTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
61 <environment_variable name="DEEPTOOLS_PYTHONPATH" action="set_to">$INSTALL_DIR</environment_variable>
62 <environment_variable name="DEEPTOOLS_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
63 <!-- libpng lib path -->
64 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
65 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
66 <!-- disable the config file of deepTools -->
67 <environment_variable name="DEEP_TOOLS_NO_CONFIG" action="set_to">TRUE</environment_variable>
68 </action>
69 </actions>
70 </install>
71 <readme>
72 Installation of deepTools from Fidel Ramirez.
73 https://github.com/fidelram/deepTools
74 </readme>
75 </package>
76 </tool_dependency>