Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize

comparison deepTools_macros.xml @ 5:07167a0f70d9 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 4b6c1004addf9496c85fb8566173e4f9f9e9d356
author bgruening
date Fri, 18 Mar 2016 08:44:45 -0400
parents 6da6f2908463
children a14f74993305
comparison
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4:1a34ad2f4704 5:07167a0f70d9
338 #set labels=[] 338 #set labels=[]
339 #for $counter, $bamfile in enumerate($bamfiles): 339 #for $counter, $bamfile in enumerate($bamfiles):
340 ln -s "${bamfile}" "./${counter}.bam" && 340 ln -s "${bamfile}" "./${counter}.bam" &&
341 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" && 341 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" &&
342 #silent $files.append('%s.bam' % $counter) 342 #silent $files.append('%s.bam' % $counter)
343 #silent $labels.append('%s' % ($bamfile.display_name)) 343 #silent $labels.append("'%s'" % ($bamfile.display_name))
344 #end for 344 #end for
345 ]]> 345 ]]>
346 </token> 346 </token>
347 347
348 <token name="@multiple_input_bigwigs@"> 348 <token name="@multiple_input_bigwigs@">
350 #set files=[] 350 #set files=[]
351 #set labels=[] 351 #set labels=[]
352 #for $counter, $bigwig in enumerate($bigwigfiles): 352 #for $counter, $bigwig in enumerate($bigwigfiles):
353 ln -s "${bigwig}" "${counter}.bw" && 353 ln -s "${bigwig}" "${counter}.bw" &&
354 #silent $files.append('%s.bw' % $counter) 354 #silent $files.append('%s.bw' % $counter)
355 #silent $labels.append('%s' % ($bigwig.display_name)) 355 #silent $labels.append("'%s'" % ($bigwig.display_name))
356 #end for 356 #end for
357 ]]> 357 ]]>
358 </token> 358 </token>
359 359
360 <xml name="reference_genome_source"> 360 <xml name="reference_genome_source">