Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize

comparison deepTools_macros.xml @ 3:6da6f2908463 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c
author bgruening
date Wed, 09 Mar 2016 17:49:50 -0500
parents 011ea45dda07
children 07167a0f70d9
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2:ef131d53cbdf 3:6da6f2908463
70 label="Region of the genome to limit the operation to" 70 label="Region of the genome to limit the operation to"
71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." /> 71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." />
72 </xml> 72 </xml>
73 73
74 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> 74 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
75 <token name="@WRAPPER_VERSION@">2.1.0</token> 75 <token name="@WRAPPER_VERSION@">2.2.2</token>
76 <xml name="requirements"> 76 <xml name="requirements">
77 <requirements> 77 <requirements>
78 <requirement type="package" version="2.7.10">python</requirement> 78 <requirement type="package" version="2.7.10">python</requirement>
79 <requirement type="binary">@BINARY@</requirement> 79 <requirement type="binary">@BINARY@</requirement>
80 <requirement type="package" version="2.1.0">deepTools</requirement> 80 <requirement type="package" version="2.2.2">deepTools</requirement>
81 <yield /> 81 <yield />
82 </requirements> 82 </requirements>
83 <expand macro="stdio" /> 83 <expand macro="stdio" />
84 <version_command>@BINARY@ --version</version_command> 84 <version_command>@BINARY@ --version</version_command>
85 </xml> 85 </xml>
308 </xml> 308 </xml>
309 309
310 <xml name="multiple_input_bams"> 310 <xml name="multiple_input_bams">
311 <param argument="--bamfiles" type="data" format="bam" min="1" 311 <param argument="--bamfiles" type="data" format="bam" min="1"
312 label="Bam file" multiple="true" 312 label="Bam file" multiple="true"
313 help="The BAM file must be sorted."/> 313 help=""/>
314 </xml> 314 </xml>
315 315
316 <xml name="multiple_input_bams_min2"> 316 <xml name="multiple_input_bams_min2">
317 <param argument="--bamfiles" type="data" format="bam" min="2" 317 <param argument="--bamfiles" type="data" format="bam" min="2"
318 label="Bam file" multiple="true" 318 label="Bam file" multiple="true"
319 help="The BAM file must be sorted."/> 319 help=""/>
320 </xml> 320 </xml>
321 321
322 <xml name="multiple_input_bigwigs"> 322 <xml name="multiple_input_bigwigs">
323 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True" min="2" 323 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True" min="2"
324 label="Bigwig file" 324 label="Bigwig file"