Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize

comparison tool-data/deepTools_seqs.loc.sample @ 0:bb2b0ad44c0e draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee-dirty
author bgruening
date Mon, 25 Jan 2016 20:14:03 -0500
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-1:000000000000 0:bb2b0ad44c0e
1 #This is a sample file distributed with Galaxy that enables tools
2 #to use a directory of 2bit genome files for use with deepTools. You will
3 #need to supply these files and then create a deepTools_seqs.loc file
4 #similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The deepTools_seqs.loc
6 #file has this format:
7 #
8 #<unique_build_id> <display_name> <file_path>
9 #
10 #So, for example, if your deepTools_seqs.loc began like this:
11 #
12 #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit
13 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit
14 #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit
15 #
16 #then your /depot/data2/galaxy/twobit/ directory
17 #would need to contain the following 2bit files:
18 #
19 #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit
20 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit
21 #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit
22 #
23 #Your deepTools_seqs.loc file should include an entry per line for
24 #each file you have stored that you want to be available. Note that
25 #your files should all have the extension '2bit'.
26 #
27 #Please note that the <unique_build_id> is also used as "Species name abbreviation".