Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize
diff bamPEFragmentSize.xml @ 3:6da6f2908463 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c
author | bgruening |
---|---|
date | Wed, 09 Mar 2016 17:49:50 -0500 |
parents | 011ea45dda07 |
children | a14f74993305 |
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--- a/bamPEFragmentSize.xml Thu Feb 18 11:42:40 2016 -0500 +++ b/bamPEFragmentSize.xml Wed Mar 09 17:49:50 2016 -0500 @@ -26,7 +26,7 @@ </command> <inputs> <param name="bamInput" format="bam" type="data" label="BAM file" - help="The BAM file must be sorted."/> + help=""/> <param argument="--histogram" type="boolean" truevalue="--histogram" falsevalue="" label="Get the distribution of fragment lengths as a histogram" help=""/> @@ -66,13 +66,13 @@ <![CDATA[ What it does ---------------- +------------ This tool samples a BAM file with paired-end data to estimate the fragment length distribution. Properly paired reads are preferred for computation, i.e., unless a region does not contain any concordant pairs, discordant pairs are ignored. Output ----------- +------ The **default** output is a simple summary statistic for the observed fragment lengths.