Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize
diff deepTools_macros.xml @ 28:7c1beb6d6eca draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit e7e3025eb4fffe5deb34c12a6d402d79241d9ed5
| author | bgruening |
|---|---|
| date | Thu, 18 May 2023 20:41:10 +0000 |
| parents | 3f9dc453c0e8 |
| children | 195e98217334 |
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--- a/deepTools_macros.xml Fri Feb 11 14:57:37 2022 +0000 +++ b/deepTools_macros.xml Thu May 18 20:41:10 2023 +0000 @@ -368,7 +368,6 @@ <xml name="pseudocount"> <param argument="--pseudocount" type="text" value="1 1" label="Pseudocount" help="Small number to avoid dividing by zero. You can specify separate values for the pseudocount added to the numerator and denominator by providing two values separated by a space."/> </xml> - <token name="@REFERENCES@"> .. class:: infomark @@ -483,7 +482,7 @@ <token name="@multiple_input_bams@"> <![CDATA[ #if $custom_sample_labels_conditional.custom_labels_select == "Yes": - #set custom_labels=labels + #set custom_labels=$custom_sample_labels_conditional.labels #end if #set files=[] #set labels=[] @@ -498,7 +497,7 @@ ln -s '${bamfile.metadata.cram_index}' './${counter}.bam.crai' && #end if #silent $files.append("'%s.bam'" % $counter) - #silent $labels.append("'%s'" % identifier) + #silent $labels.append("'%s'" % $identifier) #end for #else: #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): @@ -522,7 +521,7 @@ <token name="@multiple_input_bigwigs@"> <![CDATA[ #if $custom_sample_labels_conditional.custom_labels_select == "Yes": - #set custom_labels=labels + #set custom_labels=$custom_sample_labels_conditional.labels #end if #set files=[] #set labels=[]