# HG changeset patch
# User bgruening
# Date 1554207058 14400
# Node ID 93eb012d9eed111b35ca3292afa33b3ff04d9551
# Parent  9c346a32a05350e4790dc6dfea6c3f81b4ec8ac3
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57

diff -r 9c346a32a053 -r 93eb012d9eed bigwigCompare.xml
--- a/bigwigCompare.xml	Wed Feb 20 07:55:54 2019 -0500
+++ b/bigwigCompare.xml	Tue Apr 02 08:10:58 2019 -0400
@@ -28,6 +28,7 @@
             #if $advancedOpt.showAdvancedOpt == "yes":
 
               $advancedOpt.skipNAs
+              $advancedOpt.skipZeroOverZero
               --scaleFactors '$advancedOpt.scaleFactor1:$advancedOpt.scaleFactor2'
               --binSize $advancedOpt.binSize
 
@@ -95,6 +96,7 @@
                     help="Size of the bins in bases for the output of the bigwig/bedgraph file."/>
 
                 <expand macro="skipNAs" />
+                <expand macro="skipZeroOverZero" />
                 <expand macro="scaleFactors" />
                 <expand macro="plotTitle" />
                 <expand macro="blacklist" />
diff -r 9c346a32a053 -r 93eb012d9eed deepTools_macros.xml
--- a/deepTools_macros.xml	Wed Feb 20 07:55:54 2019 -0500
+++ b/deepTools_macros.xml	Tue Apr 02 08:10:58 2019 -0400
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.2.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.2.1.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.2.0">deeptools</requirement>
+            <requirement type="package" version="3.2.1">deeptools</requirement>
             <requirement type="package" version="1.9">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -650,6 +650,14 @@
                  (default: False)" />
     </xml>
 
+    <xml name="skipZeroOverZero">
+        <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
+            help="Skip bins where BOTH files lack coverage.">
+            <option value="" selected="true">No</option>
+            <option value="--skipZeroOverZero">Yes, skip them.</option>
+        </param>
+    </xml>
+
     <xml name="exactScaling">
         <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False"
             label="Compute an exact scaling factor"