Mercurial > repos > bgruening > deeptools_compute_matrix
comparison tool_dependencies.xml.orig @ 1:275ed3e83de0 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
author | bgruening |
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date | Mon, 15 Feb 2016 10:34:00 -0500 |
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0:14cb57237e46 | 1:275ed3e83de0 |
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1 <?xml version='1.0' encoding='utf-8'?> | |
2 <tool_dependency> | |
3 <package name="numpy" version="1.9"> | |
4 <repository name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" /> | |
5 </package> | |
6 <package name="pybigwig" version="0.2.4"> | |
7 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc" prior_installation_required="True"/> | |
8 </package> | |
9 <package name="matplotlib" version="1.4"> | |
10 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" /> | |
11 </package> | |
12 <package name="scipy" version="0.14"> | |
13 <repository name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" /> | |
14 </package> | |
15 <<<<<<< HEAD | |
16 <package name="deepTools" version="2.0.1"> | |
17 <repository name="package_python_2_7_deeptools_2_0_1" owner="iuc"/> | |
18 ======= | |
19 <package name="pysam" version="0.8.3"> | |
20 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" /> | |
21 </package> | |
22 <package name="bx-python" version="0.7.2"> | |
23 <repository name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" /> | |
24 </package> | |
25 <package name="python" version="2.7.10"> | |
26 <repository name="package_python_2_7_10" owner="iuc" prior_installation_required="True" /> | |
27 >>>>>>> d56067f86089e75354a2fad266002db3730766d9 | |
28 </package> | |
29 <package name="deepTools" version="2.1.0"> | |
30 <install version="1.0"> | |
31 <actions> | |
32 <action type="setup_python_environment"> | |
33 <repository name="package_python_2_7_10" owner="iuc"> | |
34 <package name="python" version="2.7.10" /> | |
35 </repository> | |
36 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc"> | |
37 <package name="pysam" version="0.8.3" /> | |
38 </repository> | |
39 <repository name="package_python_2_7_numpy_1_9" owner="iuc"> | |
40 <package name="numpy" version="1.9" /> | |
41 </repository> | |
42 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc"> | |
43 <package name="matplotlib" version="1.4" /> | |
44 </repository> | |
45 <repository name="package_python_2_7_scipy_0_14" owner="iuc"> | |
46 <package name="scipy" version="0.14" /> | |
47 </repository> | |
48 <repository name="package_python_2_7_bx_python_0_7" owner="iuc"> | |
49 <package name="bx-python" version="0.7.2" /> | |
50 </repository> | |
51 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc"> | |
52 <package name="pybigwig" version="0.2.4" /> | |
53 </repository> | |
54 <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package> | |
55 </action> | |
56 | |
57 <action type="set_environment"> | |
58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
59 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
60 <environment_variable name="DEEPTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> | |
61 <environment_variable name="DEEPTOOLS_PYTHONPATH" action="set_to">$INSTALL_DIR</environment_variable> | |
62 <environment_variable name="DEEPTOOLS_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable> | |
63 <!-- libpng lib path --> | |
64 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> | |
65 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> | |
66 <!-- disable the config file of deepTools --> | |
67 <environment_variable name="DEEP_TOOLS_NO_CONFIG" action="set_to">TRUE</environment_variable> | |
68 </action> | |
69 </actions> | |
70 </install> | |
71 <readme> | |
72 Installation of deepTools from Fidel Ramirez. | |
73 https://github.com/fidelram/deepTools | |
74 </readme> | |
75 </package> | |
76 </tool_dependency> |