Mercurial > repos > bgruening > deeptools_compute_matrix

comparison computeMatrix.xml @ 10:6f334c8bd52f draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0eeb2e1a184186ba5ac044136e71b943e2af0f09
author bgruening
date Mon, 05 Dec 2016 08:12:43 -0500
parents aee77c22123d
children babca70c3586
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9:4b3adcb7c7e9 10:6f334c8bd52f
85 ]]> 85 ]]>
86 </command> 86 </command>
87 <inputs> 87 <inputs>
88 88
89 <repeat name="regionsFiles" title="Select regions" min="1"> 89 <repeat name="regionsFiles" title="Select regions" min="1">
90 <param name="regionsFile" format="bed" type="data" label="Regions to plot" 90 <param name="regionsFile" format="bed,gtf" type="data" label="Regions to plot"
91 help="File, in BED format, containing the regions to plot."/> 91 help="File, in BED format, containing the regions to plot."/>
92 </repeat> 92 </repeat>
93 93
94 <param name="scoreFileName" format="bigwig" type="data" 94 <param name="scoreFileName" format="bigwig" type="data"
95 label="Score file" multiple="True" 95 label="Score file" multiple="True"
170 <when value="yes"> 170 <when value="yes">
171 <param name="binSize" type="integer" value="50" min="1" 171 <param name="binSize" type="integer" value="50" min="1"
172 label="Length, in bases, of non-overlapping bins used for averaging the score over the regions length" 172 label="Length, in bases, of non-overlapping bins used for averaging the score over the regions length"
173 help="(--binSize)"/> 173 help="(--binSize)"/>
174 174
175 <expand macro="sortRegions" /> 175 <expand macro="sortRegionsComputeMatrix" />
176 <expand macro="sortUsing" /> 176 <expand macro="sortUsing" />
177 177
178 <param name="averageTypeBins" type="select" 178 <param name="averageTypeBins" type="select"
179 label="Define the type of statistic that should be displayed." 179 label="Define the type of statistic that should be displayed."
180 help="The value is computed for each bin. (--averageTypeBins)"> 180 help="The value is computed for each bin. (--averageTypeBins)">